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  1. Article

    Open Access

    Disease-induced changes in bacterial and fungal communities from plant below- and aboveground compartments

    The plant microbes are an integral part of the host and play fundamental roles in plant growth and health. There is evidence indicating that plants have the ability to attract beneficial microorganisms through...

    Mingfeng Cao, Songqing Huang, **g**g Li in Applied Microbiology and Biotechnology (2024)

  2. Article

    Open Access

    Improving the production of carbamoyltobramycin by an industrial Streptoalloteichus tenebrarius through metabolic engineering

    Tobramycin is an essential and extensively used broad-spectrum aminoglycoside antibiotic obtained through alkaline hydrolysis of carbamoyltobramycin, one of the fermentation products of Streptoalloteichus tenebra...

    Yun Feng, Yiqi Jiang, Xutong Chen, Li Zhu in Applied Microbiology and Biotechnology (2024)

  3. Article

    Optimization of welan gum extraction and purification using lysozyme and alkaline protease

    Welan gum, a natural polysaccharide produced by Sphingomonas sp. ATCC 31555, has attracted considerable attention in the scientific community due to its desirable properties. However, challenges, such as high vis...

    Yuying Wang, TianTian Zhang, Li Zhu, Ruotong Li in Applied Microbiology and Biotechnology (2024)

  4. Article

    Open Access

    Bioinformatic analysis of structures and encoding genes of Escherichia coli surface polysaccharides sheds light on the heterologous biosynthesis of glycans

    Surface polysaccharides (SPs), such as lipopolysaccharide (O antigen) and capsular polysaccharide (K antigen), play a key role in the pathogenicity of Escherichia coli (E. coli). Gene cluster for polysaccharide a...

    Ao Dong, Chengzhi Liu, **aoting Hua, Yunsong Yu, Yan Guo, Dongshu Wang in BMC Genomics (2023)

  5. No Access

    Article

    New two-stage pH combined with dissolved oxygen control strategy for cyclic β-1,2 glucans synthesis

    On the basis of a novel two-stage pH combined with dissolved oxygen (DO) control strategy in fed-batch fermentation, this research addresses the influence of pH on cyclic β-1,2-glucans (CβGs) biosynthesis and ...

    Chuan-Chao Wu, Juan-Juan Qu, Hong-Tao Zhang in Applied Microbiology and Biotechnology (2023)

  6. No Access

    Article

    Transcriptomic analysis reveal the responses of dendritic cells to VDBP

    Vitamin D binding protein (VDBP) is an essential plasma carrier protein, which plays possible roles in reproductive health, disease and so on. However, the effects of VDBP on immunity have not been fully studied ...

    Biwei Cao, Tao Wen, Meng Wei, Yuan **ong, Wan Liu, Li Zhu, **g Zhou in Genes & Genomics (2022)

  7. No Access

    Article

    New high-density fermentation method for producing high molecular weight polysialic acid based on the combination fermentation strategy

    Polysialic acid (PSA) is a long-chain linear amino polysaccharide with broad application prospects; however, its relatively low molecular weight limits its application range. This study aims to explore a new f...

    Zhongwei Yin, Lin Gao, Li Zhu, **ngqiao Peng in Applied Microbiology and Biotechnology (2022)

  8. Article

    Open Access

    A genome wide association study for the number of animals born dead in domestic pigs

    The number of animals born dead, which includes the number of mummified (NM) and stillborn (NS) animals, is the most important trait to directly quantify the reproductive loss in domestic pigs. In this study, ...

    **xian Wu, Kai Wang, Jie Zhou, Qiang Yang, **di Yang, Anan Jiang in BMC Genetics (2019)

  9. No Access

    Article

    Analysis of culturable microbiota present in the stomach of children with gastric symptoms

    Despite extensive studies on the gastric microbiota, including Helicobacter pylori and non-H. pylori, the bacterial composition in children remains unknown. In this study, we analyzed the culturable gastric bacte...

    Changcheng Guo, Fang Liu, Li Zhu, Fangcao Wu in Brazilian Journal of Microbiology (2019)

  10. Article

    Open Access

    Transcriptome-wide N 6 -methyladenosine methylome profiling of porcine muscle and adipose tissues reveals a potential mechanism for transcriptional regulation and differential methylation pattern

    N 6 -methyladenosine (m6A) is the most prevalent internal form of modification in messenger RNA in higher eukaryotes a...

    Xuelian Tao, Jianning Chen, Yanzhi Jiang, Yingying Wei, Yan Chen in BMC Genomics (2017)

  11. Article

    Open Access

    Genome-wide DNA methylation changes in skeletal muscle between young and middle-aged pigs

    Age-related physiological, biochemical and functional changes in mammalian skeletal muscle have been shown to begin at the mid-point of the lifespan. However, the underlying changes in DNA methylation that occ...

    Long **, Zhi Jiang, Yudong **a, **’er Lou, Lei Chen, Hongmei Wang in BMC Genomics (2014)

  12. Article

    Open Access

    Complete genome sequence and comparative genomic analyses of the vancomycin-producing Amycolatopsis orientalis

    Amycolatopsis orientalis is the type species of the genus and its industrial strain HCCB10007, derived from ATCC 43491, has been used for large-scale production of the vital antibiotic vancomycin. However, to dat...

    Li Xu, He Huang, Wei Wei, Yi Zhong, Biao Tang, Hua Yuan, Li Zhu in BMC Genomics (2014)

  13. No Access

    Article

    A novel third chromosomal locus controls susceptibility to Autographa californica multiple nucleopolyhedrovirus in the silkworm, Bombyx mori

    Baculovirus demonstrates specific infection spectrums and thus one certain host exhibits particular response to single baculovirus isolate. Autographa californica multiple nucleopolyhedrovirus (AcMNPV) is conside...

    Jian Xu, Takahiro Kusakabe, Kimiko Yamamoto in Applied Microbiology and Biotechnology (2014)

  14. No Access

    Article

    Establishment of a soaking RNA interference and Bombyx mori nucleopolyhedrovirus (BmNPV)-hypersensitive cell line using Bme21 cell

    The double-stranded RNA (dsRNA) mediated RNA interference (RNAi) is widely employed in silkworm and its tissue-derived cell lines for gene function analysis. Baculovirus expression vector system (BEVS) has an ...

    Jian Xu, Hiroaki Mon, Takahiro Kusakabe in Applied Microbiology and Biotechnology (2013)

  15. No Access

    Article

    A new effective process for production of curdlan oligosaccharides based on alkali-neutralization treatment and acid hydrolysis of curdlan particles in water suspension

    Biologically active β-1,3-oligosaccharides with rapidly growing biomedical applications are produced from hydrolysis of curdlan polysaccharide. The water-insoluble curdlan impedes its hydrolysis efficiency whi...

    **g Li, Li Zhu, Zhi-Yong Zheng, **ao-Bei Zhan in Applied Microbiology and Biotechnology (2013)

  16. No Access

    Article

    Soaking RNAi-mediated modification of Sf9 cells for baculovirus expression system by ectopic expression of Caenorhabditis elegans SID-1

    RNA interference (RNAi) is a biological phenomenon that silences the expression of genes of interest. Passive double-stranded RNA (dsRNA) uptake has been uniquely observed in Caenorhabditis elegans due to the exp...

    Jian Xu, Yudai Nagata, Hiroaki Mon, Zhiqing Li in Applied Microbiology and Biotechnology (2013)

  17. Article

    Open Access

    Breed, sex and anatomical location-specific gene expression profiling of the porcine skeletal muscles

    Skeletal muscle is one of the most important economic traits in agricultural animals, especially in pigs. In the modern pig industry, lean type pigs have undergone strong artificial selection for muscle growth...

    Jie Zhang, Chaowei Zhou, Jideng Ma, Lei Chen, Anan Jiang, Li Zhu in BMC Genetics (2013)

  18. No Access

    Article

    A new polysialic acid production process based on dual-stage pH control and fed-batch fermentation for higher yield and resulting high molecular weight product

    To determine the factors influencing the resulting molecular weight of polysialic acid (PSA), batch fermentations by using Escherichia coli were conducted. It was found that temperature and pH were significant fa...

    Zhi-Yong Zheng, Shun-Zhi Wang, Guo-Shun Li in Applied Microbiology and Biotechnology (2013)

  19. No Access

    Article

    Removal of l-alanine from the production of l-2-aminobutyric acid by introduction of alanine racemase and d-amino acid oxidase

    l-2-Aminobutyric acid can be synthesized in a transamination reaction from l-threonine and l-aspartic acid as substrates by the action of threonine deaminase and aromatic aminotransferase, but the by-product l-al...

    Li Zhu, Rongsheng Tao, Yi Wang, Yu Jiang, **n Lin in Applied Microbiology and Biotechnology (2011)

  20. Article

    Open Access

    Identification and target prediction of miRNAs specifically expressed in rat neural tissue

    MicroRNAs (miRNAs) are a large group of RNAs that play important roles in regulating gene expression and protein translation. Several studies have indicated that some miRNAs are specifically expressed in human...

    You-Jia Hua, Zhong-Yi Tang, Kang Tu, Li Zhu, Yi-Xue Li, Lu **e in BMC Genomics (2009)