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  1. No Access

    Chapter and Conference Paper

    Events Remembering Support Via Character Relationships’ Visualization of Novels

    When people read a long novel, they usually find it difficult to finish it at once. Therefore, people have to repeat the “read-and-pause” step before finishing a story. This would cause a lot of confusion in t...

    Kosuke Fujishima, Junjie Shan in Human Interface and the Management of Info… (2024)

  2. Article

    Open Access

    A new approach to biomining: Bioengineering surfaces for metal recovery from aqueous solutions

    Electronics waste production has been fueled by economic growth and the demand for faster, more efficient consumer electronics. The glass and metals in end-of-life electronics components can be reused or recyc...

    Jesica Urbina, Advait Patil, Kosuke Fujishima, Ivan G. Paulino-Lima in Scientific Reports (2019)

  3. Article

    Open Access

    Construction and characterization of metal ion-containing DNA nanowires for synthetic biology and nanotechnology

    DNA is an attractive candidate for integration into nanoelectronics as a biological nanowire due to its linear geometry, definable base sequence, easy, inexpensive and non-toxic replication and self-assembling...

    Simon Vecchioni, Mark C. Capece, Emily Toomey, Le Nguyen, Austin Ray in Scientific Reports (2019)

  4. Article

    Open Access

    Author Correction: Reconstruction of cysteine biosynthesis using engineered cysteine-free enzymes

    A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has not been fixed in the paper.

    Kosuke Fujishima, Kendrick M. Wang, Jesse A. Palmer, Nozomi Abe in Scientific Reports (2019)

  5. Article

    Open Access

    Horizontal transfer of code fragments between protocells can explain the origins of the genetic code without vertical descent

    Theories of the origin of the genetic code typically appeal to natural selection and/or mutation of hereditable traits to explain its regularities and error robustness, yet the present translation system presu...

    Tom Froese, Jorge I. Campos, Kosuke Fujishima, Daisuke Kiga in Scientific Reports (2018)

  6. Article

    Open Access

    Reconstruction of cysteine biosynthesis using engineered cysteine-free enzymes

    Amino acid biosynthesis pathways observed in nature typically require enzymes that are made with the amino acids they produce. For example, Escherichia coli produces cysteine from serine via two enzymes that cont...

    Kosuke Fujishima, Kendrick M. Wang, Jesse A. Palmer, Nozomi Abe in Scientific Reports (2018)

  7. Article

    Open Access

    An overhang-based DNA block shuffling method for creating a customized random library

    We present an overhang-based DNA block shuffling method to create a customized random DNA library with flexible sequence design and length. Our method enables the efficient and seamless assembly of short DNA b...

    Kosuke Fujishima, Chris Venter, Kendrick Wang, Raphael Ferreira in Scientific Reports (2015)

  8. Article

    Open Access

    Computational prediction and experimental validation of evolutionarily conserved microRNA target genes in bilaterian animals

    In many eukaryotes, microRNAs (miRNAs) bind to complementary sites in the 3'-untranslated regions (3'-UTRs) of target messenger RNAs (mRNAs) and regulate their expression at the stage of translation. Recent st...

    Kahori Takane, Kosuke Fujishima, Yuka Watanabe, Asako Sato, Nobuto Saito in BMC Genomics (2010)

  9. No Access

    Article

    Disrupted tRNA Gene Diversity and Possible Evolutionary Scenarios

    The following unusual tRNAs have recently been discovered in the genomes of Archaea and primitive Eukaryota: multiple-intron-containing tRNAs, which have more than one intron; split tRNAs, which are produced f...

    Junichi Sugahara, Kosuke Fujishima, Keisuke Morita in Journal of Molecular Evolution (2009)