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    Metabolic exchanges are ubiquitous in natural microbial communities

    Microbial communities drive global biogeochemical cycles and shape the health of plants and animals—including humans. Their structure and function are determined by ecological and environmental interactions th...

    Christian Kost, Kiran Raosaheb Patil, Jonathan Friedman in Nature Microbiology (2023)

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    Complexity–stability trade-off in empirical microbial ecosystems

    May’s stability theory, which holds that large ecosystems can be stable up to a critical level of complexity, a product of the number of resident species and the intensity of their interactions, has been a cen...

    Yogev Yonatan, Guy Amit, Jonathan Friedman, Amir Bashan in Nature Ecology & Evolution (2022)

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    Core gut microbial communities are maintained by beneficial interactions and strain variability in fish

    The term core microbiome describes microbes that are consistently present in a particular habitat. If the conditions in that habitat are highly variable, core microbes may also be considered to be ecological g...

    Fotini Kokou, Goor Sasson, Jonathan Friedman, Stav Eyal, Ofer Ovadia in Nature Microbiology (2019)

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    Community structure follows simple assembly rules in microbial microcosms

    Microorganisms typically form diverse communities of interacting species, whose activities have tremendous impact on the plants, animals and humans they associate with. The ability to predict the structure of ...

    Jonathan Friedman, Logan M. Higgins, Jeff Gore in Nature Ecology & Evolution (2017)

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    Surveys, simulation and single-cell assays relate function and phylogeny in a lake ecosystem

    Much remains unknown about what drives microbial community structure and diversity. Highly structured environments might offer clues. For example, it may be possible to identify metabolically similar species a...

    Sarah P. Preheim, Scott W. Olesen, Sarah J. Spencer, Arne Materna in Nature Microbiology (2016)