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  1. Article

    Open Access

    In-Situ Biofloc Affects the Core Prokaryotes Community Composition in Gut and Enhances Growth of Nile Tilapia (Oreochromis niloticus)

    Biofloc technology is commonly applied in intensive tilapia (Oreochromis niloticus) culture to maintain water quality, supply the fish with extra protein, and improve fish growth. However, the effect of dietary s...

    Yale Deng, Klaudyna Borewicz, Joost van Loo, Marko Zabala Olabarrieta in Microbial Ecology (2022)

  2. Article

    Open Access

    Impact of early-life rearing history on gut microbiome succession and performance of Nile tilapia

    Fish gut microbial colonisation starts during larval stage and plays an important role in host’s growth and health. To what extent first colonisation could influence the gut microbiome succession and growth in...

    Yale Deng, Fotini Kokou, Ep H. Eding, Marc C. J. Verdegem in Animal Microbiome (2021)

  3. Article

    Open Access

    Exogenous enzymes and probiotics alter digestion kinetics, volatile fatty acid content and microbial interactions in the gut of Nile tilapia

    Sustainable aquafeed production requires fishmeal replacement, leading to an increasing use of plant-derived ingredients. As a consequence, higher levels of antinutritional substances, such as non-starch polys...

    Roel M. Maas, Yale Deng, Yueming Dersjant-Li, Jules Petit in Scientific Reports (2021)

  4. Article

    Open Access

    Antibiotic effect and microbiome persistence vary along the European seabass gut

    The constant increase in aquaculture production has led to extensive use of antibiotics as a means to prevent and treat diseases, with adverse implications on the environment, animal health and commensal micro...

    Fotini Kokou, Goor Sasson, Itzhak Mizrahi, Avner Cnaani in Scientific Reports (2020)

  5. Article

    Open Access

    Stochasticity constrained by deterministic effects of diet and age drive rumen microbiome assembly dynamics

    How complex communities assemble through the animal’s life, and how predictable the process is remains unexplored. Here, we investigate the forces that drive the assembly of rumen microbiomes throughout a cow’...

    Ori Furman, Liat Shenhav, Goor Sasson, Fotini Kokou, Hen Honig in Nature Communications (2020)

  6. No Access

    Article

    Core gut microbial communities are maintained by beneficial interactions and strain variability in fish

    The term core microbiome describes microbes that are consistently present in a particular habitat. If the conditions in that habitat are highly variable, core microbes may also be considered to be ecological g...

    Fotini Kokou, Goor Sasson, Jonathan Friedman, Stav Eyal, Ofer Ovadia in Nature Microbiology (2019)

  7. No Access

    Article

    Effects of DL-methionine-supplemented dietary soy protein concentrate on growth performance and intestinal enzyme activity of gilthead sea bream (Sparus aurata L.)

    The present study evaluated the effects of partial fish meal (FM) replacement by a soy protein concentrate (SPC) on growth performance and digestive enzyme activity of gilthead sea bream. Isonitrogenous (45 %...

    Fotini Kokou, George Rigos, Maroudio Kentouri, Maria Alexis in Aquaculture International (2016)