Skip to main content

and
  1. Article

    Open Access

    N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes

    Transcriptome analytic tools are commonly used across patient cohorts to develop drugs and predict clinical outcomes. However, as precision medicine pursues more accurate and individualized treatment decisions...

    Qike Li, A. Grant Schissler, Vincent Gardeux, Ikbel Achour in BMC Medical Genomics (2017)

  2. Article

    Open Access

    Novel disease syndromes unveiled by integrative multiscale network analysis of diseases sharing molecular effectors and comorbidities

    Forty-two percent of patients experience disease comorbidity, contributing substantially to mortality rates and increased healthcare costs. Yet, the possibility of underlying shared mechanisms for diseases rem...

    Haiquan Li, Jungwei Fan, Francesca Vitali, Joanne Berghout in BMC Medical Genomics (2018)

  3. Article

    Open Access

    Evaluating single-subject study methods for personal transcriptomic interpretations to advance precision medicine

    Gene expression profiling has benefited medicine by providing clinically relevant insights at the molecular candidate and systems levels. However, to adopt a more ‘precision’ approach that integrates individua...

    Samir Rachid Zaim, Colleen Kenost, Joanne Berghout in BMC Medical Genomics (2019)

  4. Article

    Open Access

    binomialRF: interpretable combinatoric efficiency of random forests to identify biomarker interactions

    In this era of data science-driven bioinformatics, machine learning research has focused on feature selection as users want more interpretation and post-hoc analyses for biomarker detection. However, when ther...

    Samir Rachid Zaim, Colleen Kenost, Joanne Berghout, Wesley Chiu in BMC Bioinformatics (2020)

  5. Article

    Open Access

    Correction to: binomialRF: interpretable combinatoric efficiency of random forests to identify biomarker interactions

    An amendment to this paper has been published and can be accessed via the original article.

    Samir Rachid Zaim, Colleen Kenost, Joanne Berghout, Wesley Chiu in BMC Bioinformatics (2020)