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  1. Article

    Open Access

    Learning to predict RNA sequence expressions from whole slide images with applications for search and classification

    Deep learning methods are widely applied in digital pathology to address clinical challenges such as prognosis and diagnosis. As one of the most recent applications, deep models have also been used to extract ...

    Areej Alsaafin, Amir Safarpoor, Milad Sikaroudi, Jason D. Hipp in Communications Biology (2023)

  2. Article

    Open Access

    Publisher Correction: Development and validation of a deep learning algorithm for improving Gleason scoring of prostate cancer

    An amendment to this paper has been published and can be accessed via a link at the top of the paper.

    Kunal Nagpal, Davis Foote, Yun Liu, Po-Hsuan Cameron Chen in npj Digital Medicine (2019)

  3. No Access

    Article

    An augmented reality microscope with real-time artificial intelligence integration for cancer diagnosis

    The microscopic assessment of tissue samples is instrumental for the diagnosis and staging of cancer, and thus guides therapy. However, these assessments demonstrate considerable variability and many regions o...

    Po-Hsuan Cameron Chen, Krishna Gadepalli, Robert MacDonald, Yun Liu in Nature Medicine (2019)

  4. Article

    Open Access

    Similar image search for histopathology: SMILY

    The increasing availability of large institutional and public histopathology image datasets is enabling the searching of these datasets for diagnosis, research, and education. Although these datasets typically...

    Narayan Hegde, Jason D. Hipp, Yun Liu, Michael Emmert-Buck in npj Digital Medicine (2019)

  5. Article

    Open Access

    Development and validation of a deep learning algorithm for improving Gleason scoring of prostate cancer

    For prostate cancer patients, the Gleason score is one of the most important prognostic factors, potentially determining treatment independent of the stage. However, Gleason scoring is based on subjective micr...

    Kunal Nagpal, Davis Foote, Yun Liu, Po-Hsuan Cameron Chen in npj Digital Medicine (2019)

  6. No Access

    Article

    Cancer Treatment with Anti-PD-1/PD-L1 Agents: Is PD-L1 Expression a Biomarker for Patient Selection?

    Strategies to help improve the efficacy of the immune system against cancer represent an important innovation, with recent attention having focused on anti-programmed death (PD)-1/PD-ligand 1 (L1) monoclonal a...

    Lucia Festino, Gerardo Botti, Paul Lorigan, Giuseppe V. Masucci, Jason D. Hipp in Drugs (2016)

  7. No Access

    Protocol

    Optimal Molecular Profiling of Tissue and Tissue Components: Defining the Best Processing and Microdissection Methods for Biomedical Applications

    Isolation of well-preserved pure cell populations is a prerequisite for sound studies of the molecular basis of any tissue-based biological phenomenon. This updated chapter reviews current methods for obtainin...

    Jaime Rodriguez-Canales, Jeffrey C. Hanson, Jason D. Hipp in Pancreatic Cancer (2013)

  8. Article

    Open Access

    GeneChip analysis of human embryonic stem cell differentiation into hemangioblasts: an in silicodissection of mixed phenotypes

    Microarrays are being used to understand human embryonic stem cell (hESC) differentiation. Most differentiation protocols use a multi-stage approach that induces commitment along a particular lineage. Therefor...

    Shi-Jiang Lu, Jennifer A Hipp, Qiang Feng, Jason D Hipp, Robert Lanza in Genome Biology (2007)