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  1. Article

    Open Access

    Microcirculatory disturbance in acute liver injury is triggered by IFNγ-CD40 axis

    Acute liver failure (ALF) is a life-threatening disorder that progresses from self-limiting acute liver injury (ALI). Microcirculatory disturbance characterized by sinusoidal hypercoagulation and subsequent ma...

    Miho Kurokawa, Takeshi Goya, Motoyuki Kohjima, Masatake Tanaka in Journal of Inflammation (2024)

  2. Article

    Open Access

    Myeloid cell-specific ablation of Runx2 gene exacerbates post-infarct cardiac remodeling

    Runt-related transcription factor 2 (Runx2), a regulator of osteoblast differentiation, is pathologically involved in vascular calcification; however, the significance of Runx2 in cardiac homeostasis remains u...

    Masashi Tomimatsu, Kotaro Matsumoto, Moe Ashizuka, Shohei Kumagai in Scientific Reports (2022)

  3. Article

    Open Access

    SLPI is a critical mediator that controls PTH-induced bone formation

    Osteoclastic bone resorption and osteoblastic bone formation/replenishment are closely coupled in bone metabolism. Anabolic parathyroid hormone (PTH), which is commonly used for treating osteoporosis, shifts t...

    Akito Morimoto, Junichi Kikuta, Keizo Nishikawa, Takao Sudo in Nature Communications (2021)

  4. Article

    Open Access

    In vivo dynamic analysis of BMP-2-induced ectopic bone formation

    Bone morphogenetic protein (BMP)-2 plays a central role in bone-tissue engineering because of its potent bone-induction ability. However, the process of BMP-induced bone formation in vivo remains poorly elucidate...

    Kunihiko Hashimoto, Takashi Kaito, Masayuki Furuya, Shigeto Seno in Scientific Reports (2020)

  5. Article

    Open Access

    Bovine sperm selection procedure prior to cryopreservation for improvement of post-thawed semen quality and fertility

    The application of cryopreservation and artificial insemination technology have contributed to the advancement of animal reproduction. However, a substantial proportion of spermatozoa undergoes alterations and...

    MariaPortia B. Nagata, Junki Egashira in Journal of Animal Science and Biotechnology (2019)

  6. Article

    Open Access

    Roles of Enhancer RNAs in RANKL-induced Osteoclast Differentiation Identified by Genome-wide Cap-analysis of Gene Expression using CRISPR/Cas9

    Bidirectional transcription has been proposed to play a role associated with enhancer activity. Transcripts called enhancer RNAs (eRNAs) play important roles in gene regulation; however, their roles in osteocl...

    Yukako Sakaguchi, Keizo Nishikawa, Shigeto Seno, Hideo Matsuda in Scientific Reports (2018)

  7. Article

    Open Access

    Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells

    Comprehensively understanding the dynamics of biological systems is among the biggest current challenges in biology and medicine. To acquire this understanding, researchers have measured the time-series expres...

    Yoichi Takenaka, Kazuma Mikami, Shigeto Seno, Hideo Matsuda in BMC Bioinformatics (2018)

  8. Article

    Open Access

    Direct cell–cell contact between mature osteoblasts and osteoclasts dynamically controls their functions in vivo

    Bone homeostasis is regulated by communication between bone-forming mature osteoblasts (mOBs) and bone-resorptive mature osteoclasts (mOCs). However, the spatial–temporal relationship and mode of interaction i...

    Masayuki Furuya, Junichi Kikuta, Sayumi Fujimori, Shigeto Seno in Nature Communications (2018)

  9. Article

    Open Access

    Transcriptomic signature of the follicular somatic compartment surrounding an oocyte with high developmental competence

    During antral folliculogenesis, developmental competence of prospective oocytes is regulated in large part by the follicular somatic component to prepare the oocyte for the final stage of maturation and subseq...

    Satoshi Sugimura, Norio Kobayashi, Hiroaki Okae, Tadayuki Yamanouchi in Scientific Reports (2017)

  10. Article

    Open Access

    Directed evolution of cell size in Escherichia coli

    In bacteria, cell size affects chromosome replication, the assembly of division machinery, cell wall synthesis, membrane synthesis and ultimately growth rate. In addition, cell size can also be a target for Da...

    Mari Yoshida, Saburo Tsuru, Naoko Hirata, Shigeto Seno in BMC Evolutionary Biology (2014)

  11. No Access

    Protocol

    Inference of TFRNs (2)

    This chapter introduces to a study aiming at comprehensively understanding the transcription factor regulatory networks (TFRNs) that govern the process of a cell differentiation. Here we focus on the adipocyte...

    Hideo Matsuda in Transcription Factor Regulatory Networks (2014)

  12. No Access

    Article

    Analysis about the influence on the fetus infected with parvovirus B19 using amniotic erythropoietin and troponin-T

    We tried to identify the influence on the fetus infected with parvovirus B19 (PB19) and retrospectively analyze the severity of fetal infection.

    Masashi Yoshida, Hideo Matsuda, Yosuke Yoshinaga in Archives of Gynecology and Obstetrics (2013)

  13. Article

    Open Access

    The effect of intravenous glucose solutions on neonatal blood glucose levels after cesarean delivery

    Intravenous solutions are often administered to the mother on the day of a cesarean delivery to minimize the effect of preoperative fasting or to stabilize the hemodynamics. Different intravenous solutions con...

    Isao Fukuda, Hideo Matsuda, Shinya Sugahara, Tomiei Kazama in Journal of Anesthesia (2013)

  14. Article

    Open Access

    Multilevel comparative analysis of the contributions of genome reduction and heat shock to the Escherichia colitranscriptome

    Both large deletions in genome and heat shock stress would lead to alterations in the gene expression profile; however, whether there is any potential linkage between these disturbances to the transcriptome ha...

    Bei-Wen Ying, Shigeto Seno, Fuyuro Kaneko, Hideo Matsuda, Tetsuya Yomo in BMC Genomics (2013)

  15. Article

    Open Access

    An estimation method for inference of gene regulatory net-work using Bayesian network with uniting of partial problems

    Bayesian networks (BNs) have been widely used to estimate gene regulatory networks. Many BN methods have been developed to estimate networks from microarray data. However, two serious problems reduce the effec...

    Yukito Watanabe, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda in BMC Genomics (2012)

  16. Article

    Open Access

    Perfect Hamming code with a hash table for faster genome map**

    With the advent of next-generation sequencers, the growing demands to map short DNA sequences to a genome have promoted the development of fast algorithms and tools. The tools commonly used today are based on ...

    Yoichi Takenaka, Shigeto Seno, Hideo Matsuda in BMC Genomics (2011)

  17. No Access

    Article

    Exploration of Potential Genomic Portraits Associated with Intrahepatic Recurrence in Human Hepatocellular Carcinoma

    Hepatocellular carcinoma (HCC) is a heterogeneous disease with recognized variability in virus infection, genetic features, and clinical outcome. To date, transcriptional profilings of HCC have been used to pr...

    Nobuyoshi Kittaka, Ichiro Takemasa, Shigeto Seno in Annals of Surgical Oncology (2010)

  18. No Access

    Article

    Mobile-bearing prosthesis did not improve mid-term clinical results of total knee arthroplasty

    A prospective study was performed to compare the clinical and radiological results of mobile- and fixed-bearing total knee arthroplasty with specific attention to rotational alignment and range of motion. Sixt...

    Shuichi Matsuda, Hideki Mizu-uchi in Knee Surgery, Sports Traumatology, Arthros… (2010)

  19. No Access

    Article

    Development of an Ultra-Rapid Diagnostic Method Based on Heart-Type Fatty Acid Binding Protein Levels in the CSF of CJD Patients

    Creutzfeldt-Jakob disease (CJD) is a transmissible, fatal, neurodegenerative disease in humans. Recently, various drugs have been reported to be useful in the treatment of CJD; however, for such treatments to ...

    Yuki Matsui, Katsuya Satoh, Kazuo Mutsukura in Cellular and Molecular Neurobiology (2010)

  20. No Access

    Article

    Sudden cardiac arrest during cesarean section due to epidural anaesthesia using ropivacaine: a case report

    Sudden cardiac arrest occurred subsequent to epidural anaesthesia in the patient of elective cesarean section. During cardio–pulmonary resuscitation, immediate section saved the infant and the mother recovered...

    Masashi Yoshida, Hideo Matsuda, Isao Fukuda in Archives of Gynecology and Obstetrics (2008)

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