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Studies on the sites expressing evolutionary changes in the structure of eukaryotic 5S ribosomal RNA

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  1. Article

    Open Access

    Effect of Time of Nitrogen Application on the Growth and Yield of Two Barley (Hordeum vulgare L.) Cultivars

    A field experiment was conducted in China during winter season of 2001–2002 to study the response of time of nitrogen application on two cultivars (**umei 3 and 92-11) of barley. Apart from basal dose of 40 kg...

    Virender Sardana, Guo-** Zhang in Cereal Research Communications (2005)

  2. Article

    Open Access

    Genotypic Variation in Some Quality Traits of Malt Barley (Hordeum vulgare L.) Caused by Time of Nitrogen Application and Kernel Position within Spike

    The effect of time of nitrogen application and position of kernels in spike on kernel weight, protein content, β-amylase activity and β-glucan content were examined in two cultivars of barley. Cultivar 92-11 p...

    Virender Sardana, Guo-** Zhang in Cereal Research Communications (2005)

  3. Article

    Open Access

    In silico and microarray-based genomic approaches to identifying potential vaccine candidates against Leptospira interrogans

    Currently available vaccines against leptospirosis are of low efficacy, have an unacceptable side-effect profile, do not induce long-term protection, and provide no cross-protection against the different serov...

    Hong-Liang Yang, Yong-Zhang Zhu, **-Hong Qin, ** He, Xu-Cheng Jiang in BMC Genomics (2006)

  4. Article

    Open Access

    Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods

    Rice blast, caused by the fungal pathogen Magnaporthe grisea, is a devastating disease causing tremendous yield loss in rice production. The public availability of the complete genome sequence of M. grisea provid...

    Malali Gowda, RC Venu, Mohan B Raghupathy, Kan Nobuta, Huameng Li, Rod Wing in BMC Genomics (2006)

  5. Article

    Open Access

    Genetic diversity among major endemic strains of Leptospira interrogans in China

    Leptospirosis is a world-widely distributed zoonosis. Humans become infected via exposure to pathogenic Leptospira spp. from contaminated water or soil. The availability of genomic sequences of Leptospira interro...

    ** He, Yue-Ying Sheng, Yao-Zhou Shi, **u-Gao Jiang, **-Hong Qin in BMC Genomics (2007)

  6. Article

    Open Access

    Diverse genome structures of Salmonella paratyphi C

    Salmonella paratyphi C, like S. typhi, is adapted to humans and causes typhoid fever. Previously we reported different genome structures between two strains of S. paratyphi C, which suggests that S. paratyphi C m...

    Wei-Qiao Liu, Gui-Rong Liu, Jun-Qian Li, Guo-Min Xu, Danni Qi, **ao-Yan He in BMC Genomics (2007)

  7. Article

    Open Access

    Improving prediction accuracy of tumor classification by reusing genes discarded during gene selection

    Since the high dimensionality of gene expression microarray data sets degrades the generalization performance of classifiers, feature selection, which selects relevant features and discards irrelevant and redu...

    Jack Y Yang, Guo-Zheng Li, Hao-Hua Meng, Mary Qu Yang, You** Deng in BMC Genomics (2008)

  8. Article

    Open Access

    Selecting subsets of newly extracted features from PCA and PLS in microarray data analysis

    Dimension reduction is a critical issue in the analysis of microarray data, because the high dimensionality of gene expression microarray data set hurts generalization performance of classifiers. It consists o...

    Guo-Zheng Li, Hua-Long Bu, Mary Qu Yang, Xue-Qiang Zeng, Jack Y Yang in BMC Genomics (2008)

  9. Article

    Open Access

    Detection of genomic deletions in rice using oligonucleotide microarrays

    The induction of genomic deletions by physical- or chemical- agents is an easy and inexpensive means to generate a genome-saturating collection of mutations. Different mutagens can be selected to ensure a muta...

    Myron Bruce, Ann Hess, Jianfa Bai, Ramil Mauleon, M Genaleen Diaz in BMC Genomics (2009)

  10. Article

    Open Access

    Deep and Comparative Transcriptome Analysis of Rice Plants Infested by the Beet Armyworm (Spodoptera exigua) and Water Weevil (Lissorhoptrus oryzophilus)

    The beet armyworm (Spodoptera exigua) and the rice water weevil (Lissorhoptrus oryzophilus) are two important insect pests in rice production. To identify insect-responsive genes in rice, we performed a deep tran...

    R. C. Venu, M. Sheshu Madhav, M. V. Sreerekha, Kan Nobuta, Yuan Zhang in Rice (2010)

  11. Article

    Open Access

    2K09 and thereafter : the coming era of integrative bioinformatics, systems biology and intelligent computing for functional genomics and personalized medicine research

    Significant interest exists in establishing synergistic research in bioinformatics, systems biology and intelligent computing. Supported by the United States National Science Foundation (NSF), International So...

    Jack Y Yang, Andrzej Niemierko, Ruzena Bajcsy, Dong Xu, Brian D Athey in BMC Genomics (2010)

  12. Article

    Open Access

    Deep sequencing reveals the complex and coordinated transcriptional regulation of genes related to grain quality in rice cultivars

    Milling yield and eating quality are two important grain quality traits in rice. To identify the genes involved in these two traits, we performed a deep transcriptional analysis of develo** seeds using both ...

    R C Venu, M V Sreerekha, Kan Nobuta, André Beló, Yuese Ning, Gynheung An in BMC Genomics (2011)

  13. Article

    Open Access

    Horizontal gene transfer in silkworm, Bombyx mori

    The domesticated silkworm, Bombyx mori, is the model insect for the order Lepidoptera, has economically important values, and has gained some representative behavioral characteristics compared to its wild ancesto...

    Bo Zhu, Miao-Miao Lou, Guan-Lin **e, Guo-Qing Zhang, Xue-** Zhou, Bin Li in BMC Genomics (2011)

  14. Article

    Open Access

    Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional chinese medicine

    Species in the ascomycete fungal genus Cordyceps have been proposed to be the teleomorphs of Metarhizium species. The latter have been widely used as insect biocontrol agents. Cordyceps species are highly prized ...

    Peng Zheng, Yongliang **a, Guohua **ao, Chenghui **ong, **ao Hu in Genome Biology (2011)

  15. Article

    Open Access

    MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets

    ChIP-Seq is widely used to characterize genome-wide binding patterns of transcription factors and other chromatin-associated proteins. Although comparison of ChIP-Seq data sets is critical for understanding ce...

    Zhen Shao, Yi**g Zhang, Guo-Cheng Yuan, Stuart H Orkin, David J Waxman in Genome Biology (2012)

  16. Article

    Open Access

    Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans

    Drosophila albomicans is a unique model organism for studying both sex chromosome and B chromosome evolution. A pair of its autosomes comprising roughly 40% of the whole genome has fused to the ancient X and Y ch...

    Qi Zhou, Hong-mei Zhu, Quan-fei Huang, Li Zhao, Guo-jie Zhang, Scott W Roy in BMC Genomics (2012)

  17. Article

    Open Access

    Development of simple sequence repeat (SSR) markers from a genome survey of Chinese bayberry (Myrica rubra)

    Chinese bayberry (Myrica rubra Sieb. and Zucc.) is a subtropical evergreen tree originating in China. It has been cultivated in southern China for several thousand years, and annual production has reached 1.1 mil...

    Yun Jiao, Hui-min Jia, **ong-wei Li, Ming-liang Chai, Hui-juan Jia in BMC Genomics (2012)

  18. Article

    Open Access

    Molecular map** of the Pi2/9 allelic gene Pi2-2 conferring broad-spectrum resistance to Magnaporthe oryzae in the rice cultivar Jefferson

    Utilization of broad-spectrum resistance (R) genes is an effective and economical strategy to control the fungal pathogen Magnaporthe oryzae, the causal agent of the rice blast disease. Among the cloned blast res...

    Nan Jiang, Zhiqiang Li, Jun Wu, Yue Wang, Liqun Wu, Suhua Wang, Dan Wang, Ting Wen in Rice (2012)

  19. Article

    Open Access

    Treeline dynamics in response to climate change in the Min Mountains, southwestern China

    Abies faxoniana is the dominant plant species of the forest ecosystem on the eastern edge of Qinghai-Tibet Plateau, where the treeline is strongly defined by climate. The tree-ring chronologies and age structure ...

    Zhi-Jiang Zhao, Guo-Zhen Shen, Liu-Yi Tan, Dong-Wei Kang in Botanical Studies (2013)

  20. Article

    Open Access

    The sodium channel gene family is specifically expressed in hen uterus and associated with eggshell quality traits

    Eggshell quality is important for the poultry industry. During eggshell formation a mass of inorganic minerals is deposited. The Sodium Channel (SCNN1) gene family plays an essential role in cation transportat...

    Yan-Feng Fan, Zhuo-Cheng Hou, Guo-Qiang Yi, Gui-Yun Xu, Ning Yang in BMC Genetics (2013)

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