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  1. No Access

    Article

    Deep transcriptome sequencing reveals the expression of key functional and regulatory genes involved in the abiotic stress signaling pathways in rice

    Drought, salt and cold are the major abiotic stresses that limit the rice production. Identification of the key functional and regulatory genes in the abiotic stress signaling pathways is important for underst...

    R. C. Venu, M. V. Sreerekha, M. Sheshu Madhav, Kan Nobuta… in Journal of Plant Biology (2013)

  2. No Access

    Article

    Molecular map** of four blast resistance genes using recombinant inbred lines of 93-11 and nipponbare

    Molecular map** of new blast resistance genes is important for develo** resistant rice cultivars using marker-assisted selection. In this study, 259 recombinant inbred lines (RILs) were developed from a cr...

    Hongmei Yang, Melissa H. Jia, Yulin Jia, … in Journal of Plant Biology (2013)

  3. Article

    Open Access

    Deep sequencing reveals the complex and coordinated transcriptional regulation of genes related to grain quality in rice cultivars

    Milling yield and eating quality are two important grain quality traits in rice. To identify the genes involved in these two traits, we performed a deep transcriptional analysis of develo** seeds using both ...

    R C Venu, M V Sreerekha, Kan Nobuta, André Beló, Yuese Ning, Gynheung An… in BMC Genomics (2011)

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  4. No Access

    Protocol

    Large Scale Identification of Genes Involved in Plant–Fungal Interactions Using Illumina’s Sequencing-by-Synthesis Technology

    Deep transcriptome profiling of pathogen-infected tissues enhances the understanding of molecular mechanisms underlying host–pathogen interactions. Illumina’s next generation sequencing technology sequencing-b...

    R. C. Venu, Yuan Zhang, Brian Weaver, Peter Carswell, Thomas K. Mitchell… in Fungal Genomics (2011)

  5. Article

    Open Access

    Deep and Comparative Transcriptome Analysis of Rice Plants Infested by the Beet Armyworm (Spodoptera exigua) and Water Weevil (Lissorhoptrus oryzophilus)

    The beet armyworm (Spodoptera exigua) and the rice water weevil (Lissorhoptrus oryzophilus) are two important insect pests in rice production. To identify insect-responsive genes in rice, we performed a deep tran...

    R. C. Venu, M. Sheshu Madhav, M. V. Sreerekha, Kan Nobuta, Yuan Zhang… in Rice (2010)

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  6. No Access

    Chapter and Conference Paper

    Isolation and Functional Analysis of Putative Effectors from Magnaporthe oryzae Using Integrated Genomic Approaches

    Rice blast disease, caused by the fungus Magnaporthe oryzae, is a leading constraint to rice production and is a serious threat to food security worldwide. To elucidate the function of effector proteins from M. o...

    Songbiao Chen, Malali Gowda, R.C. Venu… in Advances in Genetics, Genomics and Control… (2009)

  7. No Access

    Article

    Transposable Element Regulation in Rice and Arabidopsis: Diverse Patterns of Active Expression and siRNA-mediated Silencing

    Transposable elements (TEs) are DNA segments that can mediate or cause movement within genomes. We performed a comprehensive, whole-genome analysis of annotated TEs in rice (Oryza sativa L.) and Arabidopsis thali...

    André Beló, Kan Nobuta, R. C. Venu, Prakash E. Janardhanan… in Tropical Plant Biology (2008)

  8. No Access

    Article

    RL-SAGE and microarray analysis of the rice transcriptome after Rhizoctonia solani infection

    Sheath blight caused by the fungal pathogen Rhizoctonia solani is an emerging problem in rice production worldwide. To elucidate the molecular basis of rice defense to the pathogen, RNA isolated from R. solani-in...

    R. C. Venu, Yulin Jia, Malali Gowda, Melissa H. Jia… in Molecular Genetics and Genomics (2007)

  9. No Access

    Article

    An expression atlas of rice mRNAs and small RNAs

    Identification of all expressed transcripts in a sequenced genome is essential both for genome analysis and for realization of the goals of systems biology. We used the transcriptional profiling technology cal...

    Kan Nobuta, R C Venu, Cheng Lu, André Beló, Kalyan Vemaraju… in Nature Biotechnology (2007)

  10. No Access

    Article

    Advances in rice breeding, genetics and genomics

    Malali Gowda, R.C. Venu, K. Roopalakshmi, M.V. Sreerekha… in Molecular Breeding (2003)