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  1. Article

    Open Access

    Genome-wide identification and expression analysis of the KNOX family and its diverse roles in response to growth and abiotic tolerance in sweet potato and its two diploid relatives

    KNOXs, a type of homeobox genes that encode atypical homeobox proteins, play an essential role in the regulation of growth and development, hormonal response, and abiotic stress in plants. However, the KNOX gene ...

    Li-Cong Jia, Zi-Tong Yang, Li-Li Shang, Shao-Zhen He, Huan Zhang, Xu Li in BMC Genomics (2024)

  2. Article

    Open Access

    Genetic and phenotypic analysis of 225 Chinese children with developmental delay and/or intellectual disability using whole-exome sequencing

    Developmental delay (DD), or intellectual disability (ID) is a very large group of early onset disorders that affects 1–2% of children worldwide, which have diverse genetic causes that should be identified. Ge...

    Heqian Ma, Lina Zhu, **ao Yang, Meng Ao, Shunxiang Zhang, Meizhen Guo in BMC Genomics (2024)

  3. Article

    Open Access

    Chromosome-level genome provides insight into the evolution and conservation of the threatened goral (Naemorhedus goral)

    Gorals Naemorhedus resemble both goats and antelopes, which prompts much debate about the intragenus species delimitation and phylogenetic status of the genus Naemorhedus within the subfamily Caprinae. Their evol...

    Nan Sun, **ao-Ying Ma, Guang-Hong Shi, **ao-Hong Yang, Wei Li in BMC Genomics (2024)

  4. Article

    Open Access

    Transcriptome analysis reveals a lncRNA-miRNA-mRNA regulatory network in OsRpp30-mediated disease resistance in rice

    Long non-coding RNAs (lncRNAs) play critical roles in various biological processes in plants. Extensive studies utilizing high-throughput RNA sequencing have revealed that many lncRNAs are involved in plant di...

    Minghua Li, Wei Li, Meixia Zhao, Zhiqiang Li, Guo-Liang Wang, Wende Liu in BMC Genomics (2023)

  5. Article

    Open Access

    Genome-wide association study of quality traits and starch pasting properties of maize kernels

    Starch are the main nutritional components of maize (Zea mays L.), and starch pasting properties are widely used as essential indicators for quality estimation. Based on the previous studies, various genes relate...

    **nmei Guo, Zhaopeng Ge, Ming Wang, Meiai Zhao, Yuhe Pei, **yun Song in BMC Genomics (2023)

  6. Article

    Open Access

    Chromosome-level genome assembly of grass carp (Ctenopharyngodon idella) provides insights into its genome evolution

    The grass carp has great economic value and occupies an important evolutionary position. Genomic information regarding this species could help better understand its rapid growth rate as well as its unique body...

    Chang-Song Wu, Zi-You Ma, Guo-Dong Zheng, Shu-Ming Zou, Xu-Jie Zhang in BMC Genomics (2022)

  7. Article

    Open Access

    Correction to: Carriage of distinct blaKPC-2 and blaOXA-48 plasmids in a single ST11 hypervirulent Klebsiella pneumoniae isolate in Egypt

    Yanxian Yang, Yongqiang Yang, Mohamed Abd El-Gawad El-Sayed Ahmed in BMC Genomics (2022)

  8. Article

    Open Access

    Comparative genomic analyses of Polymyxin-resistant Enterobacteriaceae strains from China

    Mobile colistin resistance like gene (mcr-like gene) is a new type of polymyxin resistance gene that can be horizontally transferred in the Enterobacteriaceae. This has brought great challenges to the treatment o...

    Zhien He, Yongqiang Yang, Wei Li, **aoling Ma, Changfeng Zhang in BMC Genomics (2022)

  9. Article

    Open Access

    Carriage of distinct blaKPC-2 and blaOXA-48 plasmids in a single ST11 hypervirulent Klebsiella pneumoniae isolate in Egypt

    Carbapenem-resistant hypervirulent K. pneumoniae (CR-hvKP) causes serious infections with significant morbidity and mortality. However, the epidemiology and transmission mechanisms of CR-hvKP and the correspondin...

    Yanxian Yang, Yongqiang Yang, Mohamed Abd El-Gawad El-Sayed Ahmed in BMC Genomics (2022)

  10. Article

    Open Access

    Analyzing the gonadal transcriptome of the frog Hoplobatrachus rugulosus to identify genes involved in sex development

    The tiger frog (Hoplobatrachus rugulosus) is listed as a national Class II protected species in China. In the context of global warming, the sex ratio of amphibians will be affected, and the development of the po...

    Yun Tang, **g-Yi Chen, Guo-Hua Ding, Zhi-Hua Lin in BMC Genomics (2021)

  11. Article

    Open Access

    Selection of functional EPHB2 genotypes from ENU mutated grass carp treated with GCRV

    N-ethyl-N-nitrosourea (ENU) mutagenesis is a useful method for the genetic engineering of plants, and the production of functional mutants in animal models including mice and zebrafish. Grass carp reovirus (GCRV)...

    Meher un Nissa, Zhu-**ang Jiang, Guo-Dong Zheng, Shu-Ming Zou in BMC Genomics (2021)

  12. Article

    Open Access

    Correction to: Comparative genome analyses of four rice-infecting Rhizoctonia solani isolates reveal extensive enrichment of homogalacturonan modification genes

    Da-Young Lee, Jongbum Jeon, Ki-Tae Kim, Kyeongchae Cheong, Hyeunjeong Song in BMC Genomics (2021)

  13. Article

    Open Access

    Comparative genome analyses of four rice-infecting Rhizoctonia solani isolates reveal extensive enrichment of homogalacturonan modification genes

    Plant pathogenic isolates of Rhizoctonia solani anastomosis group 1-intraspecific group IA (AG1-IA) infect a wide range of crops causing diseases such as rice sheath blight (ShB). ShB has become a serious disease...

    Da-Young Lee, Jongbum Jeon, Ki-Tae Kim, Kyeongchae Cheong, Hyeunjeong Song in BMC Genomics (2021)

  14. Article

    Open Access

    Functional characterization and regulatory mechanism of wheat CPK34 kinase in response to drought stress

    Drought is one of the most adverse environmental factors limiting crop productions and it is important to identify key genetic determinants for food safety. Calcium-dependent protein kinases (CPKs) are known t...

    Ge-Zi Li, Han-**ao Li, Meng-Jun Xu, Peng-Fei Wang, **ang-Hong **ao in BMC Genomics (2020)

  15. Article

    Open Access

    Comparison of leaf transcriptome in response to Rhizoctonia solani infection between resistant and susceptible rice cultivars

    Sheath blight (SB), caused by Rhizoctonia solani, is a common rice disease worldwide. Currently, rice cultivars with robust resistance to R. solani are still lacking. To provide theoretic basis for molecular bree...

    Wei Shi, Shao-Lu Zhao, Kai Liu, Yi-Biao Sun, Zheng-Bin Ni, Gui-Yun Zhang in BMC Genomics (2020)

  16. Article

    Open Access

    Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication

    Advances in genome technology have simplified a new comprehension of the genetic and historical processes crucial to rapid phenotypic evolution under domestication. To get new insight into the genetic basis of...

    Zeinab Amiri Ghanatsaman, Guo-Dong Wang, Hojjat Asadollahpour Nanaei in BMC Genomics (2020)

  17. Article

    Open Access

    Identification of differentially expressed genes and pathways between intramuscular and abdominal fat-derived preadipocyte differentiation of chickens in vitro

    The distribution and deposition of fat tissue in different parts of the body are the key factors affecting the carcass quality and meat flavour of chickens. Intramuscular fat (IMF) content is an important fact...

    Meng Zhang, Fang Li, **ang-fei Ma, Wen-ting Li, Rui-rui Jiang, Rui-li Han in BMC Genomics (2019)

  18. Article

    Open Access

    Overlap** and unique roles played by ROCK1 and 2 in the modulation of coding and long noncoding RNA expression

    Our previous study described the crucial role of Rho-associated coiled-coil containing-kinases (ROCK) in hepatocellular carcinoma (HCC). However, the potential significance of long noncoding RNA downstream of ...

    He-Ming Zhou, Ji-Gang Zhang, Xue Zhang, Guo-Rong Fan, Gao-Lin Liu, Qin Li in BMC Genomics (2019)

  19. Article

    Open Access

    Transcriptional reference map of hormone responses in wheat spikes

    Phytohormones are key regulators of plant growth, development, and signalling networks involved in responses to diverse biotic and abiotic stresses. Transcriptional reference maps of hormone responses have bee...

    Peng-Fei Qi, Yun-Feng Jiang, Zhen-Ru Guo, Qing Chen, Thérèse Ouellet in BMC Genomics (2019)

  20. Article

    Open Access

    Molecular characterization of immune responses of Helicoverpa armigera to infection with the mermithid nematode Ovomermis sinensis

    Mermithid nematodes, such as Ovomermis sinensis, display a broad host range including some lepidopteran pests. Infective juveniles penetrate their host through the cuticle, complete their growth within the hemoco...

    Gui-Jie Wang, **ao-Rong Zhuo, Wen-Wen Wang, Xu-Sheng Liu, Guo-**u Wang in BMC Genomics (2019)

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