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  1. Article

    Open Access

    Learning few-shot imitation as cultural transmission

    Cultural transmission is the domain-general social skill that allows agents to acquire and use information from each other in real-time with high fidelity and recall. It can be thought of as the process that p...

    Avishkar Bhoopchand, Bethanie Brownfield, Adrian Collister… in Nature Communications (2023)

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  2. No Access

    Article

    RNA folding pathways and kinetics using 2D energy landscapes

    RNA folding pathways play an important role in various biological processes, such as (i) the hok/sok (host-killing/suppression of killing) system in E. coli to check for sufficient plasmid copy number, (ii) the c...

    Evan Senter, Ivan Dotu, Peter Clote in Journal of Mathematical Biology (2015)

  3. No Access

    Chapter and Conference Paper

    Abstract: Using the Fast Fourier Transform to Accelerate the Computational Search for RNA Conformational Switches

    We describe the broad outline of a new thermodynamics-based algorithm, FFTbor, that uses the fast Fourier transform to perform polynomial interpolation to compute the Boltzmann probability that secondary structur...

    Evan Senter, Saad Sheikh, Ivan Dotu… in Research in Computational Molecular Biology (2013)