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Positive selection of a gene family during the emergence of humans and African apes

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  1. Article

    Erratum: Genome analysis of the platypus reveals unique signatures of evolution

    Nature 453, 175–183 (2008) In this Article, Mikhail Nefedov and Pieter J. de Jong were omitted from the author list.

    Wesley C. Warren, LaDeana W. Hillier, Jennifer A. Marshall Graves, Ewan Birney in Nature (2008)

  2. Article

    Erratum: A burst of segmental duplications in the genome of the African great ape ancestor

    Nature 457, 877–881 (2009) In this Letter, Lynne V. Nazareth, Donna M. Muzny and Richard A. Gibbs were inadvertently omitted from the author list.

    Tomas Marques-Bonet, Jeffrey M. Kidd, Mario Ventura, Tina A. Graves, Ze Cheng in Nature (2009)

  3. Article

    Open Access

    Complete Khoisan and Bantu genomes from southern Africa

    The complete genome sequences of an indigenous hunter-gatherer from Namibia's Kalahari Desert and of a Bantu from South Africa are presented in this issue, together with protein-coding regions from three other...

    Stephan C. Schuster, Webb Miller, Aakrosh Ratan, Lynn P. Tomsho, Belinda Giardine in Nature (2010)

  4. Article

    Open Access

    The genome of a songbird

    The genome of the zebra finch — a songbird and a model for the study of vertebrate brain, behaviour and evolution — has been sequenced. Its comparison with the chicken genome, the only other bird genome availa...

    Wesley C. Warren, David F. Clayton, Hans Ellegren, Arthur P. Arnold in Nature (2010)

  5. Article

    Open Access

    Genetic history of an archaic hominin group from Denisova Cave in Siberia

    Using DNA extracted from a finger bone found in Denisova Cave in southern Siberia, we have sequenced the genome of an archaic hominin to about 1.9-fold coverage. This individual is from a group that shares a c...

    David Reich, Richard E. Green, Martin Kircher, Johannes Krause, Nick Patterson in Nature (2010)

  6. Article

    Open Access

    Comparative and demographic analysis of orang-utan genomes

    The genome of the Southeast Asian great ape or orang-utan has been sequenced — specifically a draft assembly of a Sumatran female individual and short-read sequence data from five further Sumatran and five Bor...

    Devin P. Locke, LaDeana W. Hillier, Wesley C. Warren, Kim C. Worley in Nature (2011)

  7. Article

    Open Access

    Insights into hominid evolution from the gorilla genome sequence

    Gorillas are humans’ closest living relatives after chimpanzees, and are of comparable importance for the study of human origins and evolution. Here we present the assembly and analysis of a genome sequence fo...

    Aylwyn Scally, Julien Y. Dutheil, LaDeana W. Hillier, Gregory E. Jordan in Nature (2012)

  8. Article

    Open Access

    The bonobo genome compared with the chimpanzee and human genomes

    Sequencing of the bonobo genome shows that more than three per cent of the human genome is more closely related to either the bonobo genome or the chimpanzee genome than those genomes are to each other.

    Kay Prüfer, Kasper Munch, Ines Hellmann, Keiko Akagi, Jason R. Miller in Nature (2012)

  9. Article

    Open Access

    Great ape genetic diversity and population history

    High-coverage sequencing of 79 (wild and captive) individuals representing all six non-human great ape species has identified over 88 million single nucleotide polymorphisms providing insight into ape genetic ...

    Javier Prado-Martinez, Peter H. Sudmant, Jeffrey M. Kidd, Heng Li in Nature (2013)

  10. Article

    Open Access

    Gibbon genome and the fast karyotype evolution of small apes

    Gibbons are small arboreal apes that display an accelerated rate of evolutionary chromosomal rearrangement and occupy a key node in the primate phylogeny between Old World monkeys and great apes. Here we prese...

    Lucia Carbone, R. Alan Harris, Sante Gnerre, Krishna R. Veeramah in Nature (2014)

  11. Article

    Open Access

    A comparative encyclopedia of DNA elements in the mouse genome

    The laboratory mouse shares the majority of its protein-coding genes with humans, making it the premier model organism in biomedical research, yet the two mammals differ in significant ways. To gain greater in...

    Feng Yue, Yong Cheng, Alessandra Breschi, Jeff Vierstra, Weisheng Wu, Tyrone Ryba in Nature (2014)

  12. Article

    Open Access

    An integrated map of structural variation in 2,504 human genomes

    Structural variants are implicated in numerous diseases and make up the majority of varying nucleotides among human genomes. Here we describe an integrated set of eight structural variant classes comprising bo...

    Peter H. Sudmant, Tobias Rausch, Eugene J. Gardner, Robert E. Handsaker in Nature (2015)

  13. Article

    Open Access

    Long-read sequencing and de novo assembly of a Chinese genome

    Short-read sequencing has enabled the de novo assembly of several individual human genomes, but with inherent limitations in characterizing repeat elements. Here we sequence a Chinese individual HX1 by single-mol...

    Lingling Shi, Yunfei Guo, Chengliang Dong, John Huddleston in Nature Communications (2016)

  14. Article

    Open Access

    A high-quality human reference panel reveals the complexity and distribution of genomic structural variants

    Structural variation (SV) represents a major source of differences between individual human genomes and has been linked to disease phenotypes. However, the majority of studies provide neither a global view of ...

    Jayne Y. Hehir-Kwa, Tobias Marschall, Wigard P. Kloosterman in Nature Communications (2016)

  15. Article

    Open Access

    De novo genic mutations among a Chinese autism spectrum disorder cohort

    Recurrent de novo (DN) and likely gene-disruptive (LGD) mutations contribute significantly to autism spectrum disorders (ASDs) but have been primarily investigated in European cohorts. Here, we sequence 189 risk ...

    Tianyun Wang, Hui Guo, Bo **ong, Holly A.F. Stessman, Huidan Wu in Nature Communications (2016)

  16. Article

    Open Access

    Epigenetic origin of evolutionary novel centromeres

    Most evolutionary new centromeres (ENC) are composed of large arrays of satellite DNA and surrounded by segmental duplications. However, the hypothesis is that ENCs are seeded in an anonymous sequence and only...

    Doron Tolomeo, Oronzo Capozzi, Roscoe R. Stanyon in Scientific Reports (2017)

  17. Article

    Open Access

    The caterpillar fungus, Ophiocordyceps sinensis, genome provides insights into highland adaptation of fungal pathogenicity

    To understand the potential genetic basis of highland adaptation of fungal pathogenicity, we present here the ~116 Mb de novo assembled high-quality genome of Ophiocordyceps sinensis endemic to the Qinghai-Tibeta...

    En-Hua **a, Da-Rong Yang, Jian-Jun Jiang, Qun-Jie Zhang, Yuan Liu in Scientific Reports (2017)

  18. Article

    Open Access

    Multi-platform discovery of haplotype-resolved structural variation in human genomes

    The incomplete identification of structural variants (SVs) from whole-genome sequencing data limits studies of human genetic diversity and disease association. Here, we apply a suite of long-read, short-read, ...

    Mark J. P. Chaisson, Ashley D. Sanders, Xuefang Zhao in Nature Communications (2019)

  19. Article

    Open Access

    AMPA receptor GluA2 subunit defects are a cause of neurodevelopmental disorders

    AMPA receptors (AMPARs) are tetrameric ligand-gated channels made up of combinations of GluA1-4 subunits encoded by GRIA1-4 genes. GluA2 has an especially important role because, following post-transcriptional ed...

    Vincenzo Salpietro, Christine L. Dixon, Hui Guo, Oscar D. Bello in Nature Communications (2019)

  20. Article

    Open Access

    Long-read assembly of the Chinese rhesus macaque genome and identification of ape-specific structural variants

    We present a high-quality de novo genome assembly (rheMacS) of the Chinese rhesus macaque (Macaca mulatta) using long-read sequencing and multiplatform scaffolding approaches. Compared to the current Indian rhesu...

    Yaoxi He, **n Luo, Bin Zhou, Ting Hu, **aoyu Meng, Peter A. Audano in Nature Communications (2019)

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