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  1. Article

    Open Access

    NIMBus: a negative binomial regression based Integrative Method for mutation Burden Analysis

    Identifying frequently mutated regions is a key approach to discover DNA elements influencing cancer progression. However, it is challenging to identify these burdened regions due to mutation rate heterogeneit...

    **g Zhang, Jason Liu, Patrick McGillivray, Caroline Yi in BMC Bioinformatics (2020)

  2. Article

    Open Access

    DiNeR: a Differential graphical model for analysis of co-regulation Network Rewiring

    During transcription, numerous transcription factors (TFs) bind to targets in a highly coordinated manner to control the gene expression. Alterations in groups of TF-binding profiles (i.e. “co-binding changes”...

    **g Zhang, Jason Liu, Donghoon Lee, Shaoke Lou, Zhanlin Chen in BMC Bioinformatics (2020)