Skip to main content

and
  1. Article

    Open Access

    Quantifying how single dose Ad26.COV2.S vaccine efficacy depends on Spike sequence features

    In the ENSEMBLE randomized, placebo-controlled phase 3 trial (NCT04505722), estimated single-dose Ad26.COV2.S vaccine efficacy (VE) was 56% against moderate to severe–critical COVID-19. SARS-CoV-2 Spike sequen...

    Craig A. Magaret, Li Li, Allan C. deCamp, Morgane Rolland in Nature Communications (2024)

  2. No Access

    Article

    Highly adaptive regression trees

    The development of machine learning methods that are both accurate and interpretable is of paramount importance in healthcare and many other fields. The Highly Adaptive Lasso (HAL) has been shown to have predi...

    Sohail Nizam, David Benkeser in Evolutionary Intelligence (2024)

  3. Article

    Open Access

    Examining protective effects of SARS-CoV-2 neutralizing antibodies after vaccination or monoclonal antibody administration

    While new vaccines for SARS-CoV-2 are authorized based on neutralizing antibody (nAb) titer against emerging variants of concern, an analogous pathway does not exist for preventative monoclonal antibodies. In ...

    Dean Follmann, Meagan P. O’Brien, Jonathan Fintzi, Michael P. Fay in Nature Communications (2023)

  4. Article

    Open Access

    Publisher Correction: Immune correlates analysis of the PREVENT-19 COVID-19 vaccine efficacy clinical trial

    Youyi Fong, Yunda Huang, David Benkeser, Lindsay N. Carpp in Nature Communications (2023)

  5. Article

    Open Access

    Immune correlates analysis of a phase 3 trial of the AZD1222 (ChAdOx1 nCoV-19) vaccine

    In the phase 3 trial of the AZD1222 (ChAdOx1 nCoV-19) vaccine conducted in the U.S., Chile, and Peru, anti-spike binding IgG concentration (spike IgG) and pseudovirus 50% neutralizing antibody titer (nAb ID50)...

    David Benkeser, Youyi Fong, Holly E. Janes, Elizabeth J. Kelly, Ian Hirsch in npj Vaccines (2023)

  6. Article

    Open Access

    Immune correlates analysis of the PREVENT-19 COVID-19 vaccine efficacy clinical trial

    In the PREVENT-19 phase 3 trial of the NVX-CoV2373 vaccine (NCT04611802), anti-spike binding IgG concentration (spike IgG), anti-RBD binding IgG concentration (RBD IgG), and pseudovirus 50% neutralizing antibo...

    Youyi Fong, Yunda Huang, David Benkeser, Lindsay N. Carpp in Nature Communications (2023)

  7. Article

    Immune correlates analysis of the ENSEMBLE single Ad26.COV2.S dose vaccine efficacy clinical trial

    Measuring immune correlates of disease acquisition and protection in the context of a clinical trial is a prerequisite for improved vaccine design. We analysed binding and neutralizing antibody measurements 4 ...

    Youyi Fong, Adrian B. McDermott, David Benkeser, Sanne Roels in Nature Microbiology (2022)

  8. No Access

    Article

    A two-stage super learner for healthcare expenditures

    To improve the estimation of healthcare expenditures by introducing a novel method that is well-suited to situations where data exhibit strong skewness and zero-inflation. Simulations, and two real-world datas...

    Ziyue Wu, Seth A. Berkowitz in Health Services and Outcomes Research Meth… (2022)

  9. No Access

    Article

    Design and Analysis Considerations for a Sequentially Randomized HIV Prevention Trial

    The TechStep study is an ongoing randomized controlled trial in HIV-negative transgender youths and young adults, which will evaluate the efficacy of mobile health interventions for reducing risk behaviors. Se...

    David Benkeser, Keith Horvath, Cathy J. Reback, Joshua Rusow in Statistics in Biosciences (2020)

  10. No Access

    Chapter

    Targeted Estimation of Cumulative Vaccine Sieve Effects

    Over the last century, effective vaccines have been developed for prevention of disease caused by many pathogens. However, effective vaccines have not yet been developed to prevent infection with the human imm...

    David Benkeser, Marco Carone, Peter Gilbert in Targeted Learning in Data Science (2018)

  11. No Access

    Chapter

    Highly Adaptive Lasso (HAL)

    In this chapter, we define a general nonparametric estimator of a d-variate function valued parameter ψ 0. This parameter is defined as a minimizer of an expectation of a loss function L(ψ)(O) that is guaranteed ...

    Mark J. van der Laan, David Benkeser in Targeted Learning in Data Science (2018)

  12. No Access

    Chapter

    Online Super Learning

    We consider the case that the data O n = (O(1), , O(n)) ∼ P 0 n is generated sequentially by a conditional probability distribution P θ, t ...

    Mark J. van der Laan, David Benkeser in Targeted Learning in Data Science (2018)

  13. Article

    Open Access

    Cross-national comparison of screening mammography accuracy measures in U.S., Norway, and Spain

    To compare accuracy measures for mammographic screening in Norway, Spain, and the US.

    Laia Domingo, Solveig Hofvind, Rebecca A. Hubbard, Marta Román in European Radiology (2016)