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  1. Article

    Open Access

    SETDB1 regulates short interspersed nuclear elements and chromatin loop organization in mouse neural precursor cells

    Transposable elements play a critical role in maintaining genome architecture during neurodevelopment. Short Interspersed Nuclear Elements (SINEs), a major subtype of transposable elements, are known to harbor...

    Dai**g Sun, Yueyan Zhu, Wenzhu Peng, Shenghui Zheng, Jie Weng in Genome Biology (2024)

  2. No Access

    Article

    BDM: An Assessment Metric for Protein Complex Structure Models Based on Distance Difference Matrix

    Protein complex structure prediction is an important problem in computational biology. While significant progress has been made for protein monomers, accurate evaluation of protein complexes remains challengin...

    Jiaqi Zhai, Wenda Wang, Ranxi Zhao in Interdisciplinary Sciences: Computational … (2024)

  3. Article

    Open Access

    Transcriptomic profiling of the develo** brain revealed cell-type and brain-region specificity in a mouse model of prenatal stress

    Prenatal stress (PS) is considered as a risk factor for many mental disorders. PS-induced transcriptomic alterations may contribute to the functional dysregulation during brain development. Here, we used RNA-s...

    Yuhao Dong, Jie Weng, Yueyan Zhu, Dai**g Sun, Wei He, Qi Chen, ** Cheng in BMC Genomics (2023)

  4. No Access

    Article

    Genome-wide association study of agronomic traits related to nitrogen use efficiency in wheat

    GWAS identified 347 QTLs associated with eight traits related to nitrogen use efficiency in a 389-count wheat panel. Four novel candidate transcription factor genes were verified using qRT-PCR.

    Huawei Shi, Ming Chen, Lifeng Gao, Yanxia Wang in Theoretical and Applied Genetics (2022)

  5. Article

    Open Access

    Genome-wide identification and characterization of long non-coding RNAs related to grain yield in foxtail millet [Setaria italica (L.) P. Beauv.]

    Long noncoding RNAs (lncRNAs) have been reported to play critical roles in diverse growth and development processes in plants. However, the systematic identification and characterization of lncRNAs in foxtail ...

    Zilong Zhao, Dan Liu, Yanjiao Cui, Suying Li, Dan Liang, Daizhen Sun in BMC Genomics (2020)

  6. Article

    Open Access

    Mining the stable quantitative trait loci for agronomic traits in wheat (Triticum aestivum L.) based on an introgression line population

    Human demand for wheat will continue to increase together with the continuous global population growth. Agronomic traits in wheat are susceptible to environmental conditions. Therefore, in breeding practice, p...

    Weiguo Chen, Daizhen Sun, Runzhi Li, Shuguang Wang, Yugang Shi in BMC Plant Biology (2020)

  7. No Access

    Article

    Variation in radial growth and wood density of Cyclocarya paliurus across its natural distribution

    As a multiple function tree species, Cyclocarya paliurus is planted and managed for timber production and medicinal use. However, it remains unclear to what extent geographical gradients in growth and wood qualit...

    Shengzuo Fang, Daiyan Sun, Xulan Shang, **angxiang Fu, Wanxia Yang in New Forests (2020)

  8. Article

    Open Access

    Identification of TaPPH-7A haplotypes and development of a molecular marker associated with important agronomic traits in common wheat

    Premature senescence of flag leaf severely affects wheat yield and quality. Chlorophyll (Chl) degradation is the most obvious symptom during leaf senescence and catalyzed by a series of enzymes. Pheophytin phe...

    Huiyan Wang, Shuguang Wang, ** Chang, Chenyang Hao, Daizhen Sun in BMC Plant Biology (2019)

  9. No Access

    Article

    QTL analysis of wheat kernel traits, and genetic effects of qKW-6A on kernel width

    The three genetic populations used in this study included a doubled-haploid (DH) population derived from ‘Hanxuan 10’ × ‘Lumai 14’, a BC3F6 population from ‘Lumai 14’ × ‘**g 411’ [introgression line (IL) populat...

    Weiguo Chen, Daizhen Sun, Xue Yan, Runzhi Li, Shuguang Wang, Yugang Shi in Euphytica (2019)

  10. Article

    Open Access

    Association of yield-related traits in founder genotypes and derivatives of common wheat (Triticum aestivum L.)

    Yield improvement is an ever-important objective of wheat breeding. Studying and understanding the phenotypes and genotypes of yield-related traits has potential for genetic improvement of crops.

    Jie Guo, Wei** Shi, Zheng Zhang, **gye Cheng, Daizhen Sun, ** Yu in BMC Plant Biology (2018)