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  1. Article

    Open Access

    Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities

    Viruses play important roles in the ocean’s biogeochemical cycles. Yet, deep ocean viruses are one of the most under-explored fractions of the global biosphere. Little is known about the environmental factors ...

    Felipe H. Coutinho, Cynthia B. Silveira, Marta Sebastián, Pablo Sánchez in Microbiome (2023)

  2. Article

    Open Access

    Viruses of sulfur oxidizing phototrophs encode genes for pigment, carbon, and sulfur metabolisms

    Viral infections modulate bacterial metabolism and ecology. Here, we investigated the hypothesis that viruses influence the ecology of purple and green sulfur bacteria in anoxic and sulfidic lakes, analogs of ...

    Poppy J. Hesketh-Best, Alice Bosco-Santos in Communications Earth & Environment (2023)

  3. Article

    Open Access

    Viral predation pressure on coral reefs

    Predation pressure and herbivory exert cascading effects on coral reef health and stability. However, the extent of these cascading effects can vary considerably across space and time. This variability is like...

    Cynthia B. Silveira, Antoni Luque, Andreas F. Haas, Ty N. F. Roach in BMC Biology (2023)

  4. Article

    Open Access

    Benthic assemblages are more predictable than fish assemblages at an island scale

    Decades of research have revealed relationships between the abundance of coral reef taxa and local conditions, especially at small scales. However, a rigorous test of covariation requires a robust dataset coll...

    Stuart A. Sandin, Esmeralda Alcantar, Randy Clark, Ramón de León in Coral Reefs (2022)

  5. No Access

    Article

    Extending the natural adaptive capacity of coral holobionts

    Anthropogenic climate change and environmental degradation destroy coral reefs, the ecosystem services they provide, and the livelihoods of close to a billion people who depend on these services. Restoration a...

    Christian R. Voolstra, David J. Suggett in Nature Reviews Earth & Environment (2021)

  6. Article

    Open Access

    Genomic and ecological attributes of marine bacteriophages encoding bacterial virulence genes

    Bacteriophages encode genes that modify bacterial functions during infection. The acquisition of phage-encoded virulence genes is a major mechanism for the rise of bacterial pathogens. In coral reefs, high bac...

    Cynthia B. Silveira, Felipe H. Coutinho, Giselle S. Cavalcanti, Sean Benler in BMC Genomics (2020)

  7. Article

    Open Access

    Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans

    Marine viruses are key drivers of host diversity, population dynamics and biogeochemical cycling and contribute to the daily flux of billions of tons of organic matter. Despite recent advancements in metagenom...

    Felipe H. Coutinho, Cynthia B. Silveira, Gustavo B. Gregoracci in Nature Communications (2017)

  8. Article

    Open Access

    Piggyback-the-Winner in host-associated microbial communities

    Phages can exploit their bacterial hosts by lytic infection, when many viral particles are released at cell lysis, or by lysogeny, when phages integrate into the host’s genome. We recently proposed a new dynam...

    Cynthia B Silveira, Forest L Rohwer in npj Biofilms and Microbiomes (2016)

  9. No Access

    Article

    Global microbialization of coral reefs

    Microbialization refers to the observed shift in ecosystem trophic structure towards higher microbial biomass and energy use. On coral reefs, the proximal causes of microbialization are overfishing and eutroph...

    Andreas F. Haas, Mohamed F. M. Fairoz, Linda W. Kelly in Nature Microbiology (2016)

  10. No Access

    Article

    Antibiotic Resistance is Widespread in Urban Aquatic Environments of Rio de Janeiro, Brazil

    Bacterial resistance to antibiotics has become a public health issue. Over the years, pathogenic organisms with resistance traits have been studied due to the threat they pose to human well-being. However, sev...

    Felipe H. Coutinho, Cynthia B. Silveira, Leonardo H. Pinto in Microbial Ecology (2014)

  11. No Access

    Reference Work Entry In depth

    The Family Alcanivoraceae

    The family Alcanivoracaceae comprises of species capable of degradation of petroleum-derived compounds as their main carbon source. These are Gram-negative, aerobic, rod-shaped bacteria commonly isolated in marin...

    Cynthia B. Silveira, Fabiano Thompson in The Prokaryotes (2014)

  12. Article

    Open Access

    Bacterial community composition shifts in the gut of Periplaneta americana fed on different lignocellulosic materials

    Cockroaches are omnivorous animals that can incorporate in their diets food of different composition, including lignocellulosic materials. Digestion of these compounds is achieved by the insect’s own enzymes a...

    Danielle Bertino-Grimaldi, Marcelo N Medeiros, Ricardo P Vieira in SpringerPlus (2013)

  13. No Access

    Article

    Microbial Community Compositional Shifts in Bleached Colonies of the Brazilian Reef-Building Coral Siderastrea stellata

    The association of metazoan, protist, and microbial communities with Scleractinian corals forms the basis of the coral holobiont. Coral bleaching events have been occurring around the world, introducing change...

    Monica M. Lins-de-Barros, Alexander M. Cardoso, Cynthia B. Silveira in Microbial Ecology (2013)

  14. No Access

    Article

    Archaea, Bacteria, and Algal Plastids Associated with the Reef-Building Corals Siderastrea stellata and Mussismilia hispida from Búzios, South Atlantic Ocean, Brazil

    Reef-building corals may be seen as holobiont organisms, presenting diverse associated microbial communities. Best known is the symbiotic relationship with zooxanthellae, but Archaea, Bacteria, fungi, viruses,...

    Monica M. Lins-de-Barros, Ricardo P. Vieira, Alexander M. Cardoso in Microbial Ecology (2010)

  15. No Access

    Article

    Archaeal and bacterial communities of heavy metal contaminated acidic waters from zinc mine residues in Sepetiba Bay

    Mining of metallic sulfide ore produces acidic water with high metal concentrations that have harmful consequences for aquatic life. To understand the composition and structure of microbial communities in acid...

    Welington I. Almeida, Ricardo P. Vieira, Alexander Machado Cardoso in Extremophiles (2009)

  16. No Access

    Article

    Bacterial communities of the marine sponges Hymeniacidon heliophila and Polymastia janeirensis and their environment in Rio de Janeiro, Brazil

    In this study we performed a survey of the bacterial communities associated with the Western Atlantic demosponges Hymeniacidon heliophila and Polymastia janeirensis, based on 16S rRNA sequencing and transmission ...

    Aline S. Turque, Alexander M. Cardoso, Cynthia B. Silveira in Marine Biology (2008)