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  1. Article

    Open Access

    SnapHiC: a computational pipeline to identify chromatin loops from single-cell Hi-C data

    Single-cell Hi-C (scHi-C) analysis has been increasingly used to map chromatin architecture in diverse tissue contexts, but computational tools to define chromatin loops at high resolution from scHi-C data are...

    Miao Yu, Armen Abnousi, Yanxiao Zhang, Guoqiang Li, Lindsay Lee in Nature Methods (2021)

  2. Article

    Open Access

    Alignment-free clustering of large data sets of unannotated protein conserved regions using minhashing

    Clustering of protein sequences is of key importance in predicting the structure and function of newly sequenced proteins and is also of use for their annotation. With the advent of multiple high-throughput se...

    Armen Abnousi, Shira L. Broschat, Ananth Kalyanaraman in BMC Bioinformatics (2018)