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  1. Article

    Open Access

    A coarse-grained model for synergistic action of multiple enzymes on cellulose

    Degradation of cellulose to glucose requires the cooperative action of three classes of enzymes, collectively known as cellulases. Endoglucanases randomly bind to cellulose surfaces and generate new chain ends...

    Andrea Asztalos, Marcus Daniels, Anurag Sethi, Tongye Shen in Biotechnology for Biofuels (2012)

  2. Article

    Open Access

    Comparative analysis of the transcriptome across distant species

    Uniform processing and detailed annotation of human, worm and fly RNA-sequencing data reveal ancient, conserved features of the transcriptome, shared co-expression modules (many enriched in developmental genes...

    Mark B. Gerstein, Joel Rozowsky, Koon-Kiu Yan, Daifeng Wang, Chao Cheng in Nature (2014)

  3. Article

    Open Access

    An integrative ENCODE resource for cancer genomics

    ENCODE comprises thousands of functional genomics datasets, and the encyclopedia covers hundreds of cell types, providing a universal annotation for genome interpretation. However, for particular applications,...

    **g Zhang, Donghoon Lee, Vineet Dhiman, Peng Jiang, Jie Xu in Nature Communications (2020)

  4. No Access

    Article

    Supervised enhancer prediction with epigenetic pattern recognition and targeted validation

    Enhancers are important non-coding elements, but they have traditionally been hard to characterize experimentally. The development of massively parallel assays allows the characterization of large numbers of e...

    Anurag Sethi, Mengting Gu, Emrah Gumusgoz, Landon Chan, Koon-Kiu Yan in Nature Methods (2020)

  5. Article

    Open Access

    Genetics implicates overactive osteogenesis in the development of diffuse idiopathic skeletal hyperostosis

    Diffuse idiopathic skeletal hyperostosis (DISH) is a condition where adjacent vertebrae become fused through formation of osteophytes. The genetic and epidemiological etiology of this condition is not well und...

    Anurag Sethi, J. Graham Ruby, Matthew A. Veras, Natalie Telis in Nature Communications (2023)

  6. Article

    Open Access

    Plasma proteomic associations with genetics and health in the UK Biobank

    The Pharma Proteomics Project is a precompetitive biopharmaceutical consortium characterizing the plasma proteomic profiles of 54,219 UK Biobank participants. Here we provide a detailed summary of this initiat...

    Benjamin B. Sun, Joshua Chiou, Matthew Traylor, Christian Benner, Yi-Hsiang Hsu in Nature (2023)