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Open AccessInferring chromosome radial organization from Hi-C data
The nonrandom radial organization of eukaryotic chromosome territories (CTs) inside the nucleus plays an important role in nuclear functional compartmentalization. Increasingly, chromosome conformation capture...
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Brownian Dynamics Simulation of Peptides with the University of Houston Brownian Dynamics (UHBD) Program
This chapter provides the background theory and a practical protocol for performing Brownian dynamics simulation of peptides. Brownian dynamics simulation represents a complementary approach to Monte Carlo and...
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Open AccessA coarse-grained model for synergistic action of multiple enzymes on cellulose
Degradation of cellulose to glucose requires the cooperative action of three classes of enzymes, collectively known as cellulases. Endoglucanases randomly bind to cellulose surfaces and generate new chain ends...
