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    Chapter

    Evolutionary Dynamics of a Population of Cells with a Toxin Suppressor Gene

    Environmental changes are known to trigger evolutionary changes, e.g. by favoring higher mutation rates. We study the evolutionary dynamics of a delayed stochastic genetic circuit using a simulator developed f...

    Antti Häkkinen, Fred G. Biddle in Transactions on Computational Systems Biol… (2011)

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    Chapter and Conference Paper

    Expressive Statistical Model Checking of Genetic Networks with Delayed Stochastic Dynamics

    The recently introduced Hybrid Automata Stochastic Logic (HASL) establishes a powerful framework for the analysis of a broad class of stochastic processes, namely Discrete Event Stochastic Processes (DESPs). H...

    Paolo Ballarini, Jarno Mäkelä, Andre S. Ribeiro in Computational Methods in Systems Biology (2012)

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    Chapter and Conference Paper

    Modelling Polar Retention of Complexes in Escherichia coli

    The cytoplasm of Escherichia coli is a crowded, heterogeneous environment. The spatial kinetics and heterogeneities of synthetic RNA-protein complexes have been recently studied using single-cell live imaging. A ...

    Abhishekh Gupta, Jason Lloyd-Price in Computational Methods in Systems Biology (2014)