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    Article

    Establishing African genomics and bioinformatics programs through annual regional workshops

    The African BioGenome Project (AfricaBP) Open Institute for Genomics and Bioinformatics aims to overcome barriers to capacity building through its distributed African regional workshops and prioritizes the exc...

    Abdoallah Sharaf, Lucky Tendani Nesengani, Ichrak Hayah in Nature Genetics (2024)

  2. Article

    Open Access

    Antibody escape and global spread of SARS-CoV-2 lineage A.27

    In spring 2021, an increasing number of infections was observed caused by the hitherto rarely described SARS-CoV-2 variant A.27 in south-west Germany. From December 2020 to June 2021 this lineage has been dete...

    Tamara Kaleta, Lisa Kern, Samuel Leandro Hong, Martin Hölzer in Nature Communications (2022)

  3. Article

    Open Access

    Author Correction: High-depth African genomes inform human migration and health

    A Correction to this paper has been published: https://doi.org/10.1038/s41586-021-03286-9.

    Ananyo Choudhury, Shaun Aron, Laura R. Botigué, Dhriti Sengupta, Gerrit Botha in Nature (2021)

  4. Article

    Open Access

    High-quality genome sequence assembly of R.A73 Enterococcus faecium isolated from freshwater fish mucus

    Whole-genome sequencing using high throughput technologies has revolutionized and speeded up the scientific investigation of bacterial genetics, biochemistry, and molecular biology. Lactic acid bacteria (LABs)...

    Rim El Jeni, Kais Ghedira, Monia El Bour, Sonia Abdelhak, Alia Benkahla in BMC Microbiology (2020)

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    Article

    High-depth African genomes inform human migration and health

    The African continent is regarded as the cradle of modern humans and African genomes contain more genetic variation than those from any other continent, yet only a fraction of the genetic diversity among Afric...

    Ananyo Choudhury, Shaun Aron, Laura R. Botigué, Dhriti Sengupta, Gerrit Botha in Nature (2020)

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    Chapter and Conference Paper

    Separators for Polynomial Dynamic Systems with Linear Complexity

    Computation biology helps to understand processes in organisms from interaction of molecules to complex functions of whole organs. Therefore, there is a need for mathematical methods and models that deliver l...

    Ines Abdeljaoued-Tej, Alia Benkahla in Computational Methods in Systems Biology (2019)

  7. Article

    Open Access

    In silico prediction of protein-protein interactions in human macrophages

    Protein-protein interaction (PPI) network analyses are highly valuable in deciphering and understanding the intricate organisation of cellular functions. Nevertheless, the majority of available protein-protein...

    Oussema Souiai, Fatma Guerfali, Slimane Ben Miled, Christine Brun in BMC Research Notes (2014)

  8. Article

    Open Access

    Methodology optimizing SAGE library tag-to-gene map**: application to Leishmania

    Leishmaniasis are widespread parasitic-diseases with an urgent need for more active and less toxic drugs and for effective vaccines. Understanding the biology of the parasite especially in the context of host ...

    Sondos Smandi, Fatma Z Guerfali, Mohamed Farhat, Khadija Ben-Aissa in BMC Research Notes (2012)

  9. Article

    Open Access

    Basal DNA repair machinery is subject to positive selection in ionizing-radiation-resistant bacteria

    Ionizing-radiation-resistant bacteria (IRRB) show a surprising capacity for adaptation to ionizing radiation and desiccation. Positive Darwinian selection is expected to play an important role in this trait, b...

    Haïtham Sghaier, Kaïs Ghedira, Alia Benkahla, Insaf Barkallah in BMC Genomics (2008)

  10. Article

    Open Access

    Simultaneous gene expression profiling in human macrophages infected with Leishmania major parasites using SAGE

    Leishmania (L) are intracellular protozoan parasites that are able to survive and replicate within the harsh and potentially hostile phagolysosomal environment of mammalian mononuclear phagocytes. A complex inter...

    Fatma Z Guerfali, Dhafer Laouini, Lamia Guizani-Tabbane, Florence Ottones in BMC Genomics (2008)

  11. Article

    Open Access

    Cross-species hybridisation of human and bovine orthologous genes on high density cDNA microarrays

    Cross-species gene-expression comparison is a powerful tool for the discovery of evolutionarily conserved mechanisms and pathways of expression control. The usefulness of cDNA microarrays in this context is th...

    James Adjaye, Ralf Herwig, Doris Herrmann, Wasco Wruck, Alia BenKahla in BMC Genomics (2004)