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  1. Article

    Open Access

    Identification of immune-associated biomarkers of diabetes nephropathy tubulointerstitial injury based on machine learning: a bioinformatics multi-chip integrated analysis

    Diabetic nephropathy (DN) is a major microvascular complication of diabetes and has become the leading cause of end-stage renal disease worldwide. A considerable number of DN patients have experienced irrevers...

    Lin Wang, Jiaming Su, Zhongjie Liu, Shaowei Ding, Yaotan Li, Baoluo Hou in BioData Mining (2024)

  2. No Access

    Article

    The auxin response factor (ARF) gene family in Cyclocarya paliurus: genome-wide identification and their expression profiling under heat and drought stresses

    Auxin response factors (ARFs), as the main components of auxin signaling, play a crucial role in various processes of plant growth and development, as well as in stress response. So far, there have been no rep...

    Ziyong Gao, Yazhu Wu, Muzi Li, Lan Ding in Physiology and Molecular Biology of Plants (2024)

  3. Article

    Open Access

    Therapeutic targeting of ARID1A-deficient cancer cells with RITA (Reactivating p53 and inducing tumor apoptosis)

    ARID1A, a component of the SWI/SNF chromatin-remodeling complex, is frequently mutated in various cancer types and has emerged as a potential therapeutic target. In this study, we observed that ARID1A-deficien...

    Zihuan Wang, Xu Zhang, Yuchen Luo, Yijiang Song, Cheng **ang in Cell Death & Disease (2024)

  4. No Access

    Article

    Dynamic intrauterine crosstalk promotes porcine embryo implantation during early pregnancy

    Dynamic crosstalk between the embryo and mother is crucial during implantation. Here, we comprehensively profile the single-cell transcriptome of pig peri-implantation embryos and corresponding maternal endome...

    Xupeng Zang, Shengchen Gu, Wen**g Wang, Junsong Shi in Science China Life Sciences (2024)

  5. Article

    Open Access

    Single-nucleotide variant calling in single-cell sequencing data with Monopogen

    Single-cell omics technologies enable molecular characterization of diverse cell types and states, but how the resulting transcriptional and epigenetic profiles depend on the cell’s genetic background remains ...

    **zhuang Dou, Yukun Tan, Kian Hong Kock, Jun Wang, Xuesen Cheng in Nature Biotechnology (2024)

  6. No Access

    Article

    Genome-wide analysis of in vivo-evolved Candida auris reveals multidrug-resistance mechanisms

    Candida auris, an emerging and multidrug-resistant fungal pathogen, has led to numerous outbreaks in China. While the resistance mechanisms against azole and amphotericin B have been studied, the development of d...

    **n-Fei Chen, Han Zhang, Ling-Li Liu, Li-Na Guo, Wen-**g Liu, Ya-Li Liu in Mycopathologia (2024)

  7. Article

    Open Access

    Population genetic analyses highlight an eastward dispersal of Puccinia striiformis f. sp. tritici from the Shaanxi province to the North China Plain

    Wheat stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is a common airborne wheat disease. The frequent occurrence at a large scale in China has caused significant yield losses and poses a consid...

    Congying Zhou, Xuan Lv, **nlei Qi, Ahsan Abdullah, Qiuyu Sun in Phytopathology Research (2024)

  8. Article

    Open Access

    A small-molecule TNIK inhibitor targets fibrosis in preclinical and clinical models

    Idiopathic pulmonary fibrosis (IPF) is an aggressive interstitial lung disease with a high mortality rate. Putative drug targets in IPF have failed to translate into effective therapies at the clinical level. ...

    Feng Ren, Alex Aliper, Jian Chen, Heng Zhao, Sujata Rao in Nature Biotechnology (2024)

  9. No Access

    Article

    Determination of the genetic diversity and population structure of Vaccinium uliginosum in Northeast China based on the chloroplast matK gene and EST-SSRseq molecular markers

    Vaccinium uliginosum Linn. is an important wild fruit resource in China. It is primarily distributed throughout the forest regions of Da **ng’an, **ao **ng’an, and Changbai Mountains. However, to the best of our ...

    Haobo Yang, Jiazhuo Chen, Yu Wang, **n Tian in Genetic Resources and Crop Evolution (2024)

  10. No Access

    Article

    Overexpression of cucumber CYP82D47 enhances resistance to powdery mildew and Fusarium oxysporum f. sp. cucumerinum

    Cytochrome P450s are a large family of protein-encoding genes in plant genomes, many of which have not yet been comprehensively characterized. Here, a novel P450 gene, CYP82D47, was isolated and functionally char...

    Hong-yu Wang, Peng-fei Li, Yu Wang, Chun-yu Chi in Functional & Integrative Genomics (2024)

  11. No Access

    Article

    Integrated metabolomic and transcriptomic analyses reveal the molecular mechanism of amino acid transport between source and sink during tea shoot development

    The weighted gene co-expression network analysis and antisense oligonucleotide-mediated transient gene silencing revealed that CsAAP6 plays an important role in amino acid transport during tea shoot development.

    Jie Zhang, Kangwei Sun, Yu Wang, Wenjun Qian, Litao Sun, Jiazhi Shen in Plant Cell Reports (2024)

  12. Article

    Open Access

    Human osteoarthritic articular cartilage stem cells suppress osteoclasts and improve subchondral bone remodeling in experimental knee osteoarthritis partially by releasing TNFAIP3

    Though articular cartilage stem cell (ACSC)-based therapies have been demonstrated to be a promising option in the treatment of diseased joints, the wide variety of cell isolation, the unknown therapeutic targ...

    Zhi-Ling Li, **ao-Tong Li, Rui-Cong Hao, Fei-Yan Wang in Stem Cell Research & Therapy (2023)

  13. Article

    Open Access

    The chromosome-scale reference genome of mirid bugs (Adelphocoris suturalis) genome provides insights into omnivory, insecticide resistance, and survival adaptation

    Adelphocoris suturalis (Hemiptera: Miridae) is a notorious agricultural pest, which causes serious economic losses to a diverse range of agricultural crops around the world. The poor understanding of its genomic ...

    Zhong** Xu, Guanying Wang, **g Luo, Mingju Zhu, Lisong Hu, Sijia Liang in BMC Biology (2023)

  14. Article

    Open Access

    Structural insights into MIC2 recognition by MIC2-associated protein in Toxoplasma gondii

    Microneme protein 2 (MIC2) and MIC2-associated protein (M2AP) play crucial roles in the gliding motility and host cell invasion of Toxoplasma gondii. Complex formation between MIC2 and M2AP is required for matura...

    Su Zhang, Fangfang Wang, Dujuan Zhang, Dongsheng Liu, Wei Ding in Communications Biology (2023)

  15. Article

    Open Access

    A novel N6-Deoxyadenine methyltransferase METL-9 modulates C. elegans immunity via dichotomous mechanisms

    N6-Methyldeoxyadenine (6mA) has been rediscovered as a DNA modification with potential biological function in metazoans. However, the physiological function and regulatory mechanisms regarding the establishment,....

    Chengchuan Ma, Tingling Xue, Qi Peng, Jie Zhang, Jialiang Guan in Cell Research (2023)

  16. Article

    Open Access

    Gene editing with an oxathiapiprolin resistance selection marker reveals that PuLLP, a loricrin-like protein, is required for oospore development in Pythium ultimum

    Oomycetes, such as Pythium species, contain numerous devastating plant pathogens that inflict substantial economic losses worldwide. Although CRISPR/Cas9-based genome editing is available, the selection markers a...

    Hui Feng, Tianli Liu, Jiaxu Li, Chuanxu Wan, Feifei Ding in Phytopathology Research (2023)

  17. Article

    Open Access

    P38-DAPK1 axis regulated LC3-associated phagocytosis (LAP) of microglia in an in vitro subarachnoid hemorrhage model

    The phagocytosis and homeostasis of microglia play an important role in promoting blood clearance and improving prognosis after subarachnoid hemorrhage (SAH). LC3-assocaited phagocytosis (LAP) contributes to t...

    **ang-**n Chen, Tao Tao, Xun-Zhi Liu, Wei Wu in Cell Communication and Signaling (2023)

  18. No Access

    Article

    A positively tuned voltage indicator for extended electrical recordings in the brain

    Genetically encoded voltage indicators (GEVIs) enable optical recording of electrical signals in the brain, providing subthreshold sensitivity and temporal resolution not possible with calcium indicators. Howe...

    S. Wenceslao Evans, Dong-Qing Shi, Mariya Chavarha, Mark H. Plitt in Nature Methods (2023)

  19. No Access

    Article

    Multi-hazard risk assessment of the Great Wall relics: a case study in the Miyun District, Bei**g

    As a world heritage, the Great Wall is threatened by many natural disasters, such as mountain floods and debris flows. The natural disaster risk assessment of the Great Wall is of great significance to the ris...

    Yingli Zhao, Sisi Wang, Ding He, Lin** Jiang in Landscape and Ecological Engineering (2023)

  20. No Access

    Article

    Analysis of Anthocyanin Accumulation and Related Gene Expression During Fig Fruit Development

    Fig (Ficus carica L.) is a deciduous tree of the Moraceae family. There are many fig cultivars with a wide variety of skin and flesh colors. Fig anthocyanin content and composition determine the color, quality, n...

    **aoai Zhang, Wei**n Wang, **** Li, Yuhang Ding in Plant Molecular Biology Reporter (2023)

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