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  1. Article

    Open Access

    Genome-wide association analysis and validation with KASP markers for nut and shell traits in almond (Prunus dulcis [Mill.] D.A.Webb)

    Almond shell hardness is an economically important quality trait that protects the integrity of the kernel. It is directly related with shelling or crack-out percent. In the U.S. and Australian markets, soft t...

    Gina M. Sideli, Diane Mather, Michelle Wirthensohn in Tree Genetics & Genomes (2023)

  2. No Access

    Article

    The delay of flowering time in almond: a review of the combined effect of adaptation, mutation and breeding

    Regulation of flowering time in almond, as in other Prunus species, is a complex process involving both chill and heat requirements. Following exposure to appropriate consecutive periods of cold and warm temperat...

    Pedro Martínez-Gómez, Angela S. Prudencio, Thomas M. Gradziel in Euphytica (2017)

  3. Article

    Open Access

    Genome-wide DNA-(de)methylation is associated with Noninfectious Bud-failure exhibition in Almond (Prunus dulcis [Mill.] D.A.Webb)

    Noninfectious bud-failure (BF) remains a major threat to almond production in California, particularly with the recent rapid expansion of acreage and as more intensive cultural practices and modern cultivars a...

    Jonathan Fresnedo-Ramírez, Helen M. Chan, Dan E. Parfitt in Scientific Reports (2017)

  4. No Access

    Article

    QTL map** and breeding value estimation through pedigree-based analysis of fruit size and weight in four diverse peach breeding programs

    The narrow genetic base of peach (Prunus persica L. Batsch) challenges efforts to accurately dissect the genetic architecture of complex traits. Standardized phenotypic assessment of pedigree-linked breeding germ...

    Jonathan Fresnedo-Ramírez, Terrence J. Frett, Paul J. Sandefur in Tree Genetics & Genomes (2016)

  5. No Access

    Article

    QTL map** of pomological traits in peach and related species breeding germplasm

    Peach is an economically important fruit tree crop that exhibits high phenotypic variability yet suffers from diversity-limited gene pool. Genetic introgression of novel alleles from related species is being p...

    Jonathan Fresnedo-Ramírez, Marco C. A. M. Bink, Eric van de Weg in Molecular Breeding (2015)

  6. No Access

    Article

    Methylation of the S f locus in almond is associated with S-RNase loss of function

    Self-compatibility in almond (Prunus dulcis) is attributed to the presence of the S f haplotype, allelic to and dominant over the series of S-alleles controlli...

    Angel Fernández i Martí, Thomas M. Gradziel in Plant Molecular Biology (2014)

  7. No Access

    Article

    Phenotypic diversity among local Spanish and foreign peach and nectarine [Prunus persica (L.) Batsch] accessions

    Phenotypic data for tree and fruit characteristics was collected over three consecutive years from a germplasm collection of 94 peach and nectarine accessions representing both traditional Spanish as well as f...

    Carolina Font i Forcada, Thomas M. Gradziel, Yolanda Gogorcena in Euphytica (2014)

  8. Article

    Open Access

    Heterogeneity in the entire genome for three genotypes of peach [Prunus persica(L.) Batsch] as distinguished from sequence analysis of genomic variants

    Peach [Prunus persica (L.) Batsch] is an economically important fruit crop that has become a genetic-genomic model for all Prunus species in the family Rosaceae. A doubled haploid reference genome sequence length...

    Jonathan Fresnedo-Ramírez, Pedro J Martínez-García, Dan E Parfitt in BMC Genomics (2013)

  9. No Access

    Article

    High density SNP map** and QTL analysis for fruit quality characteristics in peach (Prunus persica L.)

    Single nucleotide polymorphisms (SNPs) were used to construct an integrated SNP linkage map of peach (Prunus persica (L.) Batsch). A set of 1,536 SNPs were evaluated with the GoldenGate® Genoty** assay in two m...

    Pedro J. Martínez-García, Dan E. Parfitt, Ebenezer A. Ogundiwin in Tree Genetics & Genomes (2013)

  10. No Access

    Article

    Effect prediction of identified SNPs linked to fruit quality and chilling injury in peach [Prunus persica (L.) Batsch]

    Single nucleotide polymorphisms (SNPs) are a fundamental source of genomic variation. Large SNP panels have been developed for Prunus species. Fruit quality traits are essential peach breeding program objectives ...

    Pedro J. Martínez-García, Jonathan Fresnedo-Ramírez in Plant Molecular Biology (2013)

  11. No Access

    Article

    Influence of year and genetic factors on chilling injury susceptibility in peach (Prunus persica (L.) Batsch)

    Chilling injury (CI) is a major physiological problem limiting consumption and export of peach and nectarine (Prunus persica (L.) Batsch). To clarify the genetic basis for chilling injury, inheritance of the majo...

    Pedro J. Martínez-García, Cameron P. Peace, Dan E. Parfitt in Euphytica (2012)

  12. Article

    Open Access

    Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection

    The application of next generation sequencing technologies and bioinformatic scripts to identify high frequency SNPs distributed throughout the peach genome is described. Three peach genomes were sequenced usi...

    Riaz Ahmad, Dan E Parfitt, Joseph Fass, Ebenezer Ogundiwin, Amit Dhingra in BMC Genomics (2011)

  13. Article

    Open Access

    A fruit quality gene map of Prunus

    Prunus fruit development, growth, ripening, and senescence includes major biochemical and sensory changes in texture, color, and flavor. The genetic dissection of these complex processes has important application...

    Ebenezer A Ogundiwin, Cameron P Peace, Thomas M Gradziel, Dan E Parfitt in BMC Genomics (2009)

  14. No Access

    Article

    Discriminating ability of molecular markers and morphological characterization in the establishment of genetic relationships in cultivated genotypes of almond and related wild species

    A total 23 morphological traits, 19 AFLP-primer combinations, 80 RAPD primers and 32 SSR primer pair were used to compare the informativeness and efficiency of random amplified polymorphic DNA (RAPD), amplifie...

    Karim Sorkheh, Behrouz Shiran, Soghra Kiani in Journal of Forestry Research (2009)

  15. No Access

    Article

    Development of ChillPeach genomic tools and identification of cold-responsive genes in peach fruit

    The ChillPeach database was developed to facilitate identification of genes controlling chilling injury (CI), a global-scale post-harvest physiological disorder in peach. It contained 7,862 high-quality ESTs (...

    Ebenezer A. Ogundiwin, Cristina Martí, Javier Forment in Plant Molecular Biology (2008)