Search
Search Results
-
Shotgun Metagenomic Approaches
The most recent advancements in the knowledge of sourdough ecologic meta-community come from the uncultured approach based on shotgun metagenomics...
-
Shallow shotgun sequencing reduces technical variation in microbiome analysis
The microbiome is known to play a role in many human diseases, but identifying key microbes and their functions generally requires large studies due...
-
Mock community taxonomic classification performance of publicly available shotgun metagenomics pipelines
Shotgun metagenomic sequencing comprehensively samples the DNA of a microbial sample. Choosing the best bioinformatics processing package can be...
-
Partitioning Human Dietary Exposure to Ammunition-Derived Lead in Meat from Game Animals Between Bullets and Shotgun Pellets
In making recommendations for restricting uses of lead shotgun pellets and bullets for hunting, regulatory agencies, including those of EU and UK...
-
SEPepQuant enhances the detection of possible isoform regulations in shotgun proteomics
Shotgun proteomics is essential for protein identification and quantification in biomedical research, but protein isoform characterization is...
-
Shotgun metagenomics reveals interkingdom association between intestinal bacteria and fungi involving competition for nutrients
BackgroundThe accuracy of internal-transcribed-spacer (ITS) and shotgun metagenomics has not been robustly evaluated, and the effect of diet on the...
-
Multi-cohort shotgun metagenomic analysis of oral and gut microbiota overlap in healthy adults
The multitude of barriers between the mouth and colon may eliminate swallowed oral bacteria. Ascertaining the presence of the same bacteria in the...
-
Meta-analysis of shotgun sequencing of gut microbiota in Parkinson’s disease
We aimed to identify gut microbial features in Parkinson’s disease (PD) across countries by meta-analyzing our fecal shotgun sequencing dataset of 94...
-
Profiling the Mammalian Lipidome by Quantitative Shotgun Lipidomics
The emerging field of lipidomics presents the systems biology approach to identify and quantify the full lipid repertoire of cells, tissues, and...
-
Two-dimensional gel and shotgun proteomics approaches for the comparative evaluation of genetically modified maize
In the safety risk assessment of genetically modified (GM) crops, it is imperative to evaluate potential unintended effects derived from genetic...
-
Analysis of intestinal flora and cognitive function in maintenance hemodialysis patients using combined 16S ribosome DNA and shotgun metagenome sequencing
BackgroundCognitive impairment is widely prevalent in maintenance hemodialysis (MHD) patients, and seriously affects their quality of life. The...
-
Genome characterization of a Turkish bovine rotavirus field isolate by shotgun metagenomics
A bovine rotavirus (BRV) isolate from Kirsehir was isolated from feces of a neonatal calf with diarrhea, identified, and sequenced by shotgun...
-
From Whole Genome Shotgun Sequencing to Viral Community Profiling: The ViromeScan Tool
ViromeScan is an innovative metagenomic analysis tool that allows characterizing the taxonomy of viral communities from raw data of metagenomics...
-
Shotgun Proteomics Methods and Protocols
This edition details a collection of specific shotgun proteomics-based laboratory techniques and applications developed in leading laboratories and...
-
Vollständige Shotgun-DNA-Metagenomik
Die vollständige DNA-Metagenomik ist die Sequenzierung aller DNA aus einer Probe, gefolgt von Zusammenfügen und Annotation sowie Zuordnung von...
-
Full Shotgun DNA Metagenomics
Full DNA metagenomics is the sequencing of all DNA from a sample followed by assembly and annotation and assignment of sequence information to...
-
Intergroup Cooperation in Shotgun Hunting Among BaYaka Foragers and Yambe Farmers from the Republic of the Congo
Whereas many evolutionary models emphasize within-group cooperation or between-group competition in explaining human large-scale cooperation, recent...
-
Shotgun assembly threshold for lattice labeling model
We study the shotgun assembly problem for the lattice labeling model, where i.i.d. uniform labels are assigned to each vertex in a d -dimensional box...
-
Type 2 Diabetes Mellitus Prediction with Gut Microbes Using Machine Learning Through Shotgun Metagenomic Sequencing
Type 2 diabetes mellitus (T2DM) has become a worldwide epidemic as a result of insulin resistance and insufficient insulin production. New research...
-
Microbial Diversity and Functional Potential of Keem: A Traditional Starter Culture for Alcoholic Beverage—Application of Next-Generation Amplicon and Shotgun Metagenome Sequences
“Pakhoi” is an ethnic drink of the Tons valley, Uttarakhand, India produced by fermenting jaggery and barley with the help of a starter culture...
