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Aci-bench: a Novel Ambient Clinical Intelligence Dataset for Benchmarking Automatic Visit Note Generation
Recent immense breakthroughs in generative models such as in GPT4 have precipitated re-imagined ubiquitous usage of these models in all applications....
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Benchmarking and Key Performance Indicators
Benchmarking and key performance indicators (KPIs) are vital tools in clinical laboratory management, allowing for the evaluation and continuous...
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Federated benchmarking of medical artificial intelligence with MedPerf
Medical artificial intelligence (AI) has tremendous potential to advance healthcare by supporting and contributing to the evidence-based practice of...
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Dyport: dynamic importance-based biomedical hypothesis generation benchmarking technique
BackgroundAutomated hypothesis generation (HG) focuses on uncovering hidden connections within the extensive information that is publicly available....
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Benchmarking of methods for DNA methylome deconvolution
Defining the number and abundance of different cell types in tissues is important for understanding disease mechanisms as well as for diagnostic and...
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Benchmarking differential abundance methods for finding condition-specific prototypical cells in multi-sample single-cell datasets
BackgroundTo analyze the large volume of data generated by single-cell technologies and to identify cellular correlates of particular clinical or...
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Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes
BackgroundAs most viruses remain uncultivated, metagenomics is currently the main method for virus discovery. Detecting viruses in metagenomic data...
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Heterogeneous pseudobulk simulation enables realistic benchmarking of cell-type deconvolution methods
BackgroundComputational cell type deconvolution enables the estimation of cell type abundance from bulk tissues and is important for understanding...
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Benchmarking computational variant effect predictors by their ability to infer human traits
BackgroundComputational variant effect predictors offer a scalable and increasingly reliable means of interpreting human genetic variation, but...
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A unified scheme for the benchmarking of upper limb functions in neurological disorders
BackgroundIn neurorehabilitation, we are witnessing a growing awareness of the importance of standardized quantitative assessment of limb functions....
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Leveraging WHO’s Global Benchmarking Tool to strengthen capacity in clinical trials oversight for public health emergencies: the GHPP VaccTrain model
BackgroundA stable, well-functioning and integrated national medicines regulatory system is a core component of health systems resilient against...
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Prospective benchmarking of an observational analysis in the SWEDEHEART registry against the REDUCE-AMI randomized trial
Prospective benchmarking of an observational analysis against a randomized trial increases confidence in the benchmarking process as it relies...
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Measuring case severity: a novel tool for benchmarking and clinical documentation improvement
BackgroundSeverity of illness (SOI) is an All Patients Refined Diagnosis Related Groups (APR DRG) modifier based on comorbidity capture. Tracking SOI...
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Benchmarking outcomes for distal pancreatectomy: critical evaluation of four multicenter studies
BackgroundBenchmarking is a validated tool for outcome assessment and international comparison of best achievable surgical outcomes. The methodology...
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vcfdist: accurately benchmarking phased small variant calls in human genomes
Accurately benchmarking small variant calling accuracy is critical for the continued improvement of human whole genome sequencing. In this work, we...
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Variant calling and benchmarking in an era of complete human genome sequences
Genetic variant calling from DNA sequencing has enabled understanding of germline variation in hundreds of thousands of humans. Sequencing...
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Extend the benchmarking indel set by manual review using the individual cell line sequencing data from the Sequencing Quality Control 2 (SEQC2) project
Accurate indel calling plays an important role in precision medicine. A benchmarking indel set is essential for thoroughly evaluating the indel...
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Leveraging the potential of the German operating room benchmarking initiative for planning: A ready-to-use surgical process data set
We present a freely available data set of surgical case mixes and surgery process duration distributions based on processed data from the German...
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A Multifaceted benchmarking of synthetic electronic health record generation models
Synthetic health data have the potential to mitigate privacy concerns in supporting biomedical research and healthcare applications. Modern...
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Tools for Healthcare Data Lake Infrastructure Benchmarking
Vast amounts of medical data are generated every day, and constitute a crucial asset to improve therapy outcomes, medical treatments and healthcare...
