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  1. Apparent survival and detection probability of PIT-tagged small-bodied stream fishes using multi-pass wand antenna surveys

    Passive integrated transponder (PIT) tags are used widely to track the dispersal and model survival rates of animals. However, few studies have used...

    Maddy K. Siller, Peter J. Pfaff, ... Keith B. Gido in Environmental Biology of Fishes
    Article 09 May 2023
  2. Exploring substrate associations of the non-native anemone Diadumene lineata on an open ocean coast in the SW Atlantic

    Diadumene lineata is one of the most widely distributed sea anemones in the world. It is usually found in estuaries, gulfs and bays over a broad...

    Ana P. Andrieu, Milagros I. Osinaga, ... Sandra M. Fiori in Biological Invasions
    Article 06 May 2024
  3. Receiver mount design, transmitter depth, and wind speed affect detection probability of acoustic telemetry transmitters in a Missouri River tributary

    Background

    One of the most important considerations for acoustic telemetry study designs is detection probability between the transmitter and the...

    Tanner L. Carlson, Lindsey A. P. LaBrie, ... Benjamin J. Schall in Animal Biotelemetry
    Article Open access 13 February 2023
  4. Hidden Markov modeling for maximum probability neuron reconstruction

    Recent advances in brain clearing and imaging have made it possible to image entire mammalian brains at sub-micron resolution. These images offer the...

    Thomas L. Athey, Daniel J. Tward, ... Michael I. Miller in Communications Biology
    Article Open access 25 April 2022
  5. Time-varying effects of local weather on behavior and probability of breeding deferral in two Arctic-nesting goose populations

    Arctic-nesting geese face energetic challenges during spring migration, including ecological barriers and weather conditions (e.g., precipitation and...

    Stephanie A. Cunningham, Toryn L. J. Schafer, ... Mitch D. Weegman in Oecologia
    Article Open access 28 December 2022
  6. Assignment of unimodal probability distribution models for quantitative morphological phenoty**

    Background

    Cell morphology is a complex and integrative readout, and therefore, an attractive measurement for assessing the effects of genetic and...

    Farzan Ghanegolmohammadi, Shinsuke Ohnuki, Yoshikazu Ohya in BMC Biology
    Article Open access 31 March 2022
  7. Model-Based Analyses Suggest Pleistocene Refugia over Ancient Divergence as Main Diversification Driver for a Neotropical Open-Habitat Treefrog

    Studies about diversification of Neotropical open-habitat organisms are scarce, especially in frogs, in which almost all studied species from...

    Francisco Brusquetti, Nadya C. Pupin, Célio F. B. Haddad in Evolutionary Biology
    Article 26 August 2023
  8. Leveraging probability concepts for cultivar recommendation in multi-environment trials

    Key message

    We propose using probability concepts from Bayesian models to leverage a more informed decision-making process toward cultivar...

    Kaio O. G. Dias, Jhonathan P. R. dos Santos, ... Antonio A. F. Garcia in Theoretical and Applied Genetics
    Article 22 February 2022
  9. The probability of chromatin to be at the nuclear lamina has no systematic effect on its transcription level in fruit flies

    Background

    Multiple studies have demonstrated a negative correlation between gene expression and positioning of genes at the nuclear envelope (NE)...

    Alexander Y. Afanasyev, Yoon** Kim, ... Alexey V. Onufriev in Epigenetics & Chromatin
    Article Open access 06 May 2024
  10. Fertigation frequency is a useful tool for nitrate management in intensive open-field agriculture

    The main source of nitrogen for most cultivated plants is nitrate. Agriculture has overused this nutrient, resulting in serious environmental...

    José S. Rubio-Asensio, Diego S. Intrigliolo in Irrigation Science
    Article Open access 30 January 2024
  11. Forest gaps increase true bug diversity by recruiting open land species

    Forests canopy gaps play an important role in forest ecology by driving the forest mosaic cycle and creating conditions for rapid plant reproduction...

    Rafael Achury, Michael Staab, ... Wolfgang W. Weisser in Oecologia
    Article Open access 04 June 2023
  12. Subjective confidence reflects representation of Bayesian probability in cortex

    What gives rise to the human sense of confidence? Here we tested the Bayesian hypothesis that confidence is based on a probability distribution...

    Laura S. Geurts, James R. H. Cooke, ... Janneke F. M. Jehee in Nature Human Behaviour
    Article 20 January 2022
  13. Color Coding Assessment of Haloperidol Effects on Animal Behavior in the Open Field Test

    Abstract

    Development of novel approaches to behavioral test data analysis is of considerable importance for both fundamental research and experimental...

    M. S. Makarov, Yu. I. Sysoev, ... S. V. Okovityi in Journal of Evolutionary Biochemistry and Physiology
    Article 01 January 2023
  14. The Probability of Nesting Success of the Long-Eared Owl (Asio otus, Strigidae, Strigiformes, Aves) Is Determined by the Structure and Heterogeneity of the Breeding Habitat

    Abstract —From 2001 to 2020, for each long-eared owl nest on the territory of the Crane Homeland Nature Reserve with an area of 48 km 2 , the following...

    A. V. Sharikov, T. S. Massalskaia, ... T. S. Kovinka in Biology Bulletin
    Article 01 December 2023
  15. Microscopy image recognition method of stomatal open and closed states in living leaves based on improved YOLO-X

    A plant’s stomata serve as the primary means of gas exchange between the plant and its surroundings. This process involves photosynthesis and...

    Kexin Li, Shijie Cong, ... Jiuqing Liu in Theoretical and Experimental Plant Physiology
    Article 13 October 2023
  16. Biotic interactions prior to seed dispersal determine recruitment probability of peyote (Lophophora diffusa, Cactaceae), a threatened species pollinator-dependent

    Seedlings recruitment is key to maintaining populations and depends on diverse biotic interactions and abiotic factors before and after seed...

    María I. Briseño-Sánchez, Carlos Martorell, ... María C. Mandujano in Plant Ecology
    Article 25 October 2022
  17. Hidden in plain sight: camouflage and hiding behaviour of wild precocial chicks in an open landscape

    Abstract

    Camouflage represents an important component of self-protection when animals cannot easily evade predators and is often altered by...

    Tamara Volkmer, Krisztina Kupán, ... Clemens Küpper in Behavioral Ecology and Sociobiology
    Article Open access 13 June 2024
  18. An open protocol for modeling T Cell Clonotype repertoires using TCRβ CDR3 sequences

    T cell receptor repertoires can be profiled using next generation sequencing (NGS) to measure and monitor adaptive dynamical changes in response to...

    Burcu Gurun, Wesley Horton, ... Terence P. Speed in BMC Genomics
    Article Open access 26 June 2023
  19. Unique spatial behavior of the Japanese serow (Capricornis crispus) in the open mountains of Mt. Fuji

    The Japanese serow ( Capricornis crispus ) exhibits spatial behavior adapted to forest habitats with relatively stable food supply and climatic...

    Hayato Takada in acta ethologica
    Article 23 March 2023
  20. Acoustic telemetry detection probability and location accuracy in a freshwater wetland embayment

    Background

    In recent years, large-scale acoustic telemetry observation networks have become established globally to gain a better understanding of the...

    Nathan D. Stott, Matthew D. Faust, ... Jeffrey G. Miner in Animal Biotelemetry
    Article Open access 27 May 2021
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