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Development and utilization of genome-wide InDel markers in Sorghum [Sorghum bicolor (L.) Moench]
Sorghum ( Sorghum bicolor L. Moench) has become an increasingly valuable crop for food, feed, and especially bioenergy feedstock production, which...
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Recombinations, chains and caps: resolving problems with the DCJ-indel model
One of the most fundamental problems in genome rearrangement studies is the (genomic) distance problem. It is typically formulated as finding the...
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Development of InDel markers based on chloroplast DNA for the identification of Ziziphus jujuba Mill. cultivars
Jujube ( Ziziphus jujuba Mill.) is a plant belonging to the genus Ziziphus of the family Rhamnaceae. Z. jujuba is generally rich in nutrients—vitamin...
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Indel variation in the mitochondrial ND5 region supports monophyly of the tribe Hippoglossoidini (sensu Vinnikov et al. 2018) within the family Pleuronectidae
Indel (insertion–deletion) events observed in the genome represent irreversible mutational processes, making indel regions crucial characteristics...
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NGS-Indel Coder v2.0: A Streamlined Pipeline to Code Indel Characters in Phylogenomic Data
Hypothesized evolutionary insertions and deletions in nucleic acid sequences (indels) contain significant phylogenetic information and can be...
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InDel Loci in Forensic DNA Analysis
As a part of forensic science, in the investigations of forensic cases, such as murder, sexual assault, and theft, DNA profile, which is obtained...
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Development of SNP and InDel markers by genome resequencing and transcriptome sequencing in radish (Raphanus sativus L.)
BackgroundSingle nucleotide polymorphisms (SNPs) and insertions/deletions (InDels) are the most abundant genetic variations and widely distribute...
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Genetic dissection of ten photosynthesis-related traits based on InDel- and SNP-GWAS in soybean
Key messageA total of 416 InDels and 112 SNPs were significantly associated with soybean photosynthesis-related traits. GmIWS1 and GmCDC48 might be...
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Genome-wide identification and development of InDel markers in tobacco (Nicotiana tabacum L.) using RAD-seq
Insertions and deletions (InDels) can be used as molecular markers in genetic studies and marker-assisted selection breeding. However, genetic...
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Fine map** and identification of regulatory genes for fruit neck length in bottle gourd (Lagenaria siceraria)
Fruit neck length (FNL) is one of the important commercial characteristics of bottle gourd ( Lagenaria siceraria ), which is usually desirable by...
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Development and application of novel InDel markers in flax (Linum usitatissimum L.) through whole-genome re-sequencing
Flax is an important oil and fibre crop grown in Northern Europe, Canada, India, and China. The development of molecular markers has accelerated the...
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A unique 15-bp InDel in the first intron of BMPR1B regulates its expression in Taihu pigs
BackgroundBMPR1B (Bone morphogenetic protein receptor type-1B) is a receptor in the bone morphogenetic protein (BMP) family and has been identified...
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Insights into AIM-InDel diversities in Yunnan Miao and Hani ethnic groups of China for forensic and population genetic purposes
BackgroundAncestry informative markers are regarded as useful tools for inferring the ancestral information of an individual, which have been widely...
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ProPIP: a tool for progressive multiple sequence alignment with Poisson Indel Process
BackgroundCurrent alignment tools typically lack an explicit model of indel evolution, leading to artificially short inferred alignments (i.e.,...
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Investigation of genome-wide InDel distribution and segregation in Populus with restriction-site associated DNA sequencing data
Insertion or deletion polymorphism (InDel) is one of the main genetic variations in plant genomes. However, there are few studies on InDels across...
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Genetic effect of an InDel in the promoter region of the NUDT15 and its effect on myoblast proliferation in chickens
BackgroundMolecular breeding accelerates the speed of animal breeding. Screening molecular markers that can affect economic traits through...
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Transcriptomic Approach for Global Distribution of SNP/Indel and Plant Genoty**
Single Nucleotide Polymorphisms (SNPs) are the most common structural variants found in any genome. They have been used for different genetic...
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Fine map** of TFL, a major gene regulating fruit length in snake gourd (Trichosanthes anguina L)
Fruit length is a crucial agronomic trait of snake gourd ( Trichosanthes anguina L); however, genes associated with fruit length have not been...
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A 215-bp indel at intron I of BoFLC2 affects flowering time in Brassica oleracea var. capitata during vernalization
Key messageIn response to cold, a 215-bp deletion at intron I of BoFLC2 slows its silencing activity by feedback to the core genes of the PHD-PRC2...
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InDel Loci in Forensic DNA Analysis
As a part of forensic science, in the investigations of forensic cases, such as murder, sexual assault, and theft, DNA profile, which is obtained...