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  1. Improving the sensitivity of in vivo CRISPR off-target detection with DISCOVER-Seq+

    Discovery of off-target CRISPR–Cas activity in patient-derived cells and animal models is crucial for genome editing applications, but currently...

    Roger S. Zou, Yang Liu, ... Taekjip Ha in Nature Methods
    Article Open access 06 April 2023
  2. The importance of murine phospho-MLKL-S345 in situ detection for necroptosis assessment in vivo

    Necroptosis is a caspase-independent modality of cell death implicated in many inflammatory pathologies. The execution of this pathway requires the...

    Konstantinos Kelepouras, Julia Saggau, ... Gianmaria Liccardi in Cell Death & Differentiation
    Article Open access 23 May 2024
  3. In Vivo Imaging of Bone Marrow Long-Chain Fatty Acid Uptake

    In vivo imaging enables the detection and visualization of many different processes occurring within the body. Fatty acid uptake is a fundamental...
    Jayna J. Mistry, Stuart A. Rushworth in Metabolic Reprogramming
    Protocol 2023
  4. Investigation of sRNA-mRNA Interactions in Bacillus subtilis In Vivo

    In this chapter, we describe in vivo methods for the analysis of interactions between an sRNA and its target mRNA in B. subtilis. All these methods...
    Inam Ul Haq, Peter Müller, Sabine Brantl in Bacterial Regulatory RNA
    Protocol 2024
  5. Measurement of Phytochrome B Thermal Reversion Rates In Vivo

    Thermal reversion of phytochromes is the light-independent but strongly temperature-dependent relaxation of the light-activated Pfr form of...
    Cornelia Klose, Andreas Hiltbrunner in Thermomorphogenesis
    Protocol 2024
  6. Post-click labeling enables highly accurate single cell analyses of glucose uptake ex vivo and in vivo

    Cellular glucose uptake is a key feature reflecting metabolic demand of cells in physiopathological conditions. Fluorophore-conjugated sugar...

    Masaki Tsuchiya, Nobuhiko Tachibana, Itaru Hamachi in Communications Biology
    Article Open access 16 April 2024
  7. In Vivo Tracking of Dendritic Cell Migration

    Dendritic cells (DCs) in peripheral tissue serve as a sentinel to invasion and maintain tolerance. They ingest and carry antigens to the draining...
    Michio Tomura in Dendritic Cells
    Protocol 2023
  8. Evaluation of Connexin Hemichannel Activity In Vivo

    Connexin hemichannels (Cx HCs) are hexameric structures at the cell plasma membrane, whose function as membrane transport proteins allows for the...
    Francisca M. Acosta, Manuel A. Riquelme, ... Jean X. Jiang in Connexin Hemichannels
    Protocol 2024
  9. UFObow: A single-wavelength excitable Brainbow for simultaneous multicolor ex-vivo and in-vivo imaging of mammalian cells

    Brainbow is a genetic cell-labeling technique that allows random colorization of multiple cells and real-time visualization of cell fate within a...

    Jiahong Hu, Fangfang Yang, ... Jun Chu in Communications Biology
    Article Open access 01 April 2024
  10. Genetically encoded phosphatidylserine biosensor for in vitro, ex vivo and in vivo labelling

    Background

    The dynamics of phosphatidylserine in the plasma membrane is a tightly regulated feature of eukaryotic cells. Phosphatidylserine (PS) is...

    Eimina Dirvelyte, Daina Bujanauskiene, ... Urte Neniskyte in Cellular & Molecular Biology Letters
    Article Open access 27 July 2023
  11. In-vivo Cross-linking of Biotinylated Peptide Ligands to Cell Surface Receptors

    In-vivo cross-linking of biotinylated peptides is a technique to analyze the interaction of small proteins or peptide ligands with their...
    Ronja Burggraf, Markus Albert in Plant Peptide Hormones and Growth Factors
    Protocol 2024
  12. Molecular Imaging for In Vivo Tracking and Detection of Galectin Binding Partners

    Molecular imaging (MI) is a non-invasive growing technology that allows the investigation of cellular and molecular processes in basic and clinical...
    Thais Canassa De Leo, Sofia Nascimento dos Santos, ... Marcelo Dias-Baruffi in Galectins
    Protocol 2022
  13. Evaluation of the In Vitro and In Vivo Effects of Biglycan in Innate Immunity

    Biglycan, a small leucine-rich proteoglycan (SLRP), is a crucial component of the extracellular matrix (ECM) associated with the maintenance of...
    **yang Zeng-Brouwers, Lisa Sophie Huber, ... Liliana Schaefer in Proteoglycans
    Protocol 2023
  14. Current capabilities and future perspectives of FCS: super-resolution microscopy, machine learning, and in vivo applications

    Fluorescence correlation spectroscopy (FCS) is a single molecule sensitive tool for the quantitative measurement of biomolecular dynamics and...

    Jagadish Sankaran, Thorsten Wohland in Communications Biology
    Article Open access 07 July 2023
  15. In Vivo Detection of Double-Stranded RNA by dRBFC Assay

    Double-stranded RNA (dsRNA) is the genomic material or replicate intermediate of RNA viruses, and is also a crucial signal molecule to trigger innate...
    **aofei Cheng, Yameng Luan, Aiming Wang in Plant Virology
    Protocol 2022
  16. Sensitive multicolor indicators for monitoring norepinephrine in vivo

    Genetically encoded indicators engineered from G-protein-coupled receptors are important tools that enable high-resolution in vivo neuromodulator...

    Zacharoula Kagiampaki, Valentin Rohner, ... Tommaso Patriarchi in Nature Methods
    Article 20 July 2023
  17. In Vivo Analysis of ER-Associated Protein Degradation and Ubiquitination in Arabidopsis thaliana

    The endoplasmic reticulum (ER) is the cellular site for the biosynthesis of proteins and lipids. The ER is highly dynamic, whose homeostasis is...
    Jiaqi Sun, Huanquan Zheng in The Plant Endoplasmic Reticulum
    Protocol 2024
  18. Site-Directed Cross-Linking Between Bacterial Flagellar Motor Proteins In Vivo

    The bacterial flagellum employs a rotary motor embedded on the cell surface. The motor consists of the stator and rotor elements and is driven by ion...
    Hiroyuki Terashima, Michio Homma, Seiji Kojima in Bacterial and Archaeal Motility
    Protocol 2023
  19. Metabolism-driven in vitro/in vivo disconnect of an oral ERɑ VHL-PROTAC

    Targeting the estrogen receptor alpha (ERα) pathway is validated in the clinic as an effective means to treat ER+ breast cancers. Here we present the...

    Thomas G. Hayhow, Beth Williamson, ... Claire Crafter in Communications Biology
    Article Open access 13 May 2024
  20. Iron-Related Genes and Proteins in Mesenchymal Stem Cell Detection and Therapy

    Mesenchymal stem cells (MSCs) are located in various tissues of the body. These cells exhibit regenerative and reparative properties, which makes...

    Kosha J. Mehta in Stem Cell Reviews and Reports
    Article Open access 03 June 2023
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