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  1. High- and Super-Resolution Imaging of Cell-Cell Interfaces

    Physical interfaces mediate interactions between multiple types of cells. Despite the importance of such interfaces to the cells’ function, their...
    Julia Sajman, Eilon Sherman in The Immune Synapse
    Protocol 2023
  2. High-Efficiency Single-Cell Electrical Impedance Spectroscopy

    Single-cell impedance measurement is label free and noninvasive in characterizing the electrical properties of single cells. At present, though...
    Yongxiang Feng, Liang Huang, ... Wenhui Wang in Cell Viability Assays
    Protocol 2023
  3. Live-Cell High-Throughput Screen for Monitoring Autophagy Flux

    Autophagy is a cellular process implicated in the renewal of cellular components and the maintenance of cellular hemostasis and therefore associated...
    Sara Cano-Franco, Hung Ho-Xuan, ... Alexandra Stolz in Chemogenomics
    Protocol 2023
  4. hcHCR: High-Throughput Single-Cell Imaging of RNA in Human Primary Immune Cells

    Functional genomics and chemical screens can identify and characterize novel cellular factors regulating signaling networks and chemical tools to...
    Manasi Gadkari, **g Sun, ... Gianluca Pegoraro in Fluorescence In Situ Hybridization (FISH)
    Protocol 2024
  5. Annotation of the Effect of Chemogenomic Compounds on Cell Health Using High-Content Microscopy in Live-Cell Mode

    The characterization of chemogenomic libraries with respect to their general effect on cellular health represents essential data for the annotation...
    Amelie Tjaden, Stefan Knapp, Susanne Müller in Chemogenomics
    Protocol 2023
  6. Morphological profiling by high-throughput single-cell biophysical fractometry

    Complex and irregular cell architecture is known to statistically exhibit fractal geometry, i.e., a pattern resembles a smaller part of itself....

    Ziqi Zhang, Kelvin C. M. Lee, ... Kevin K. Tsia in Communications Biology
    Article Open access 24 April 2023
  7. Cell Type-Specific Analysis for High-throughput Data

    Biological samples collected in experiments are often mixtures of different cell types. In the analysis of high-throughput omics data from tissue...
    Chapter 2022
  8. High-throughput single-cell transcriptomics of bacteria using combinatorial barcoding

    Microbial split-pool ligation transcriptomics (microSPLiT) is a high-throughput single-cell RNA sequencing method for bacteria. With four...

    Karl D. Gaisser, Sophie N. Skloss, ... Anna Kuchina in Nature Protocols
    Article 17 June 2024
  9. Application of Single-Cell Sequencing on Stem Cell Research

    The variation and heterogeneity within cells are the fundamental features of stem cells. Each tissue has a resident stem cell niche compartmentalized...
    Sayan Paul, Tungki Pratama Umar, ... Khawaja H. Haider in Handbook of Stem Cell Applications
    Reference work entry 2024
  10. sciMET-cap: high-throughput single-cell methylation analysis with a reduced sequencing burden

    DNA methylation is a key component of the mammalian epigenome, playing a regulatory role in development, disease, and other processes. Robust,...

    Sonia N. Acharya, Ruth V. Nichols, ... Andrew C. Adey in Genome Biology
    Article Open access 10 July 2024
  11. High-Throughput Assembly of Compositionally Controlled 3D Cell Communities for Developmental Engineering

    Cell patterning for 3D culture has increased our understanding of how cells interact among themselves and with their environment during tissue...
    John M. Viola, Catherine M. Porter, ... Alex J. Hughes in Tissue Morphogenesis
    Protocol 2024
  12. SCS: cell segmentation for high-resolution spatial transcriptomics

    Spatial transcriptomics promises to greatly improve our understanding of tissue organization and cell–cell interactions. While most current platforms...

    Hao Chen, Dongshunyi Li, Ziv Bar-Joseph in Nature Methods
    Article 10 July 2023
  13. Acoustic tweezers for high-throughput single-cell analysis

    Acoustic tweezers provide an effective means for manipulating single cells and particles in a high-throughput, precise, selective and contact-free...

    Shujie Yang, Joseph Rufo, ... Tony Jun Huang in Nature Protocols
    Article 19 July 2023
  14. Production of retroviral vectors in continuous high cell density culture

    Abstract

    Retroviral vectors derived from murine leukemia virus (MLV) are used in somatic gene therapy applications e.g. for genetic modification of...

    Marc D. Hein, Daniel Kazenmaier, ... Udo Reichl in Applied Microbiology and Biotechnology
    Article Open access 05 August 2023
  15. p16High senescence restricts cellular plasticity during somatic cell reprogramming

    Despite advances in four-factor (4F)-induced reprogramming (4FR) in vitro and in vivo, how 4FR interconnects with senescence remains largely under...

    Bogdan B. Grigorash, Dominic van Essen, ... Dmitry V. Bulavin in Nature Cell Biology
    Article 31 August 2023
  16. Building Biomaterials to Mimic 3D Cell–Cell Junctions

    Cell–cell interactions typically occur in a 3D context that is distinct from conventional 2D cell-substrate interactions in a Petri dish. Here, we...
    Daniel J. Cohen in Tissue Morphogenesis
    Protocol 2024
  17. From Cell States to Cell Fates: Control of Cell State Transitions

    We examine the coordinated behavior of thousands of genes in cell fate transitions through genome expression as an integrated dynamical system using...
    Masa Tsuchiya, Alessandro Giuliani, Paul Brazhnik in Systems Biology
    Protocol 2024
  18. High-Speed Video Microscopy of Ependymal Cilia in Brain Organotypic and Cell Culture Models

    The wall of the ventricular system within the neuraxis is lined almost entirely by E1 ependymal cells, each of which projects multiple motile cilia...
    William J. Dawes, Oriane Grant, ... Christopher O’Callaghan in Cilia
    Protocol 2024
  19. High-capacity sample multiplexing for single cell chromatin accessibility profiling

    Single-cell chromatin accessibility has emerged as a powerful means of understanding the epigenetic landscape of diverse tissues and cell types, but...

    Gregory T. Booth, Riza M. Daza, ... Cole Trapnell in BMC Genomics
    Article Open access 04 December 2023
  20. Neural cell isolation from adult macaques for high-throughput analyses and neurosphere cultures

    The low number of neural progenitor cells (NPCs) present in the adult and aged primate brains represents a challenge for generating high-yield and...

    Jia-Ru Wei, Dongchang **ao, ... Sheng Liu in Nature Protocols
    Article 12 April 2023
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