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Exploration of eQTLs regulating transcript for internode elongation under deep water treatment employing haplotype network in diverse deep water rice landraces of Assam, India
Several economically important genes of rice govern various key traits however, their allelic (haplotype) combinations remain unexplored. Elongation...
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A Haplotype Network Approach to Reconstruct the Phylogeny of Rosa L. (Rosaceae)
AbstractWe used a plastid ndh C- trn V intergenic spacer to reconstruct the genealogy of haplotypes and phylogenetic relationships of major taxonomic...
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Mitochondrial genetic diversity and haplotype distribution of golden jackal (Canis aureus, Linnaeus 1758) in Iran, a bridge from India to North Europe
Golden jackal ( Canis aureus ) is one of the most common canid in Iran and can be found in habitats from Southeast Asia to Europe. Its rapid range...
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Molecular Characterization and Haplotype Diversity of Aporcelaimellus obtusicaudatus (Bastian, 1865) Altherr, 1968 (Dorylaimida, Aporcelaimidae) from India
AbstractAporcelaimellus obtusicaudatus was recovered from mustard and sugarcane fields of Uttar Pradesh and Uttarakhand, India. The present species...
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Haplotype diversity of Heterodera koreana (Tylenchida: Heteroderidae), affecting bamboo in Korea
In a survey of plant-parasitic nematodes in agricultural fields, cyst-forming nematodes were found in soil planted bamboo in Korea. The aim of this...
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Haplotype-resolved genome of Mimosa bimucronata revealed insights into leaf movement and nitrogen fixation
BackgroundMimosa bimucronata originates from tropical America and exhibits distinctive leaf movement characterized by a relative slow speed....
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CandiHap: a haplotype analysis toolkit for natural variation study
Haplotype blocks greatly assist association-based map** of casual candidate genes by significantly reducing genoty** effort. The gene haplotype...
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Hitting the Road: Haplotype Diversity of Fire Ants Nesting on Disturbed Atlantic Forest Habitats
Ants of the genus Solenopsis are globally distributed, presenting high diversity and many generalist species. In South America, the dominant species...
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Analysis of 1276 Haplotype-Resolved Genomes Allows Characterization of Cis- and Trans-Abundant Genes
Many methods for haploty** have materialized, but their application on a significant scale has been rare to date. Here we summarize analyses that...
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Tracing the geographic origins of two forms of Opuntia ficus-indica cultivated in Argentina using haplotype diversity patterns, and cytogenetic and morphological analyses
Opuntia ficus-indica , commonly known as prickly-pear, tuna, or nopal, is a cactus species of economic significance. It is widely cultivated for its...
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A long-read sequencing and SNP haplotype-based novel preimplantation genetic testing method for female ADPKD patient with de novo PKD1 mutation
The autosomal dominant form of polycystic kidney disease (ADPKD) is the most common hereditary disease that causes late-onset renal cyst development...
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Haplotype-resolved genome assembly provides insights into evolutionary history of the Actinidia arguta tetraploid
Actinidia arguta , known as hardy kiwifruit, is a widely cultivated species with distinct botanical characteristics such as small and smooth-fruited,...
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Haplotype-resolved genome assembly of the diploid Rosa chinensis provides insight into the mechanisms underlying key ornamental traits
Roses are consistently ranked at the forefront in cut flower production. Increasing demands of market and changing climate conditions have resulted...
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Neolithic expansion and the 17q21.31 inversion in Iberia: an evolutionary approach to H2 haplotype distribution in the Near East and Europe
The chromosomal region 17q21.31 harbors a 900 kb inversion polymorphism named after the microtubule-associated protein tau (MAPT) gene. Since no...
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Genome-wide association map** combined with gene-based haplotype analysis identify a novel gene for shoot length in rice (Oryza sativa L.)
Key messageGenome-wide association map** revealed a novel QTL for shoot length across multiple environments. Its causal gene, LOC_Os01g68500 , was...
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Genome-wide detection of selection signatures in Jianli pigs reveals novel cis-regulatory haplotype in EDNRB associated with two-end black coat color
BackgroundJianli pig, a renowned indigenous breed in China, has the characteristics of a two-end black (TEB) coat color, excellent meat quality,...
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Haplotype variations of sucrose phosphate synthase B gene among sugarcane accessions with different sucrose content
BackgroundSucrose phosphate synthase B ( SPS B) gene encoding an important rate-limiting enzyme for sucrose synthesis in sugarcane is mainly expressed...
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Haplotype diversity patterns in Quercus suber (Fagaceae) inferred from cpDNA sequence data
Chloroplast genome diversity in cork oak ( Quercus suber ) is characterised by the occurrence of haplotypes that are akin to those found in other...
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Molecular diversity, haplotype distribution and genetic variation flow of Bipolaris sorokiniana fungus causing spot blotch disease in different wheat-growing zones
Bipolaris sorokiniana (BS) is an economically important fungal pathogen causing spot blotch of wheat ( Trtiticum aestivum ) and found in all...
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Recurrent neural network for predicting absence of heterozygosity from low pass WGS with ultra-low depth
BackgroundThe absence of heterozygosity (AOH) is a kind of genomic change characterized by a long contiguous region of homozygous alleles in a...
