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Profile and potential bioactivity of the miRNome and metabolome expressed in Malva sylvestris L. leaf and flower
Malva sylvestris L. (common mallow) is a plant species widely used in phytotherapy and ethnobotanical practices since time immemorial. Characterizing...
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Positive impacts of Nannochloropsis oculata supplementation on gene expression of immune and antioxidant markers and metabolic profile of Barki sheep in the transition period and lipogenic effects on progeny
Nannochloropsis species should be given priority when it comes to microalgae that should be added to feed since they are suitable for intense culture...
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Genome-wide identification and molecular expression profile analysis of FHY3/FAR1 gene family in walnut (Juglans sigillata L.) development
BackgroundJuglans sigillata L. (walnut) has a high economic value for nuts and wood and has been widely grown and eaten around the world. Light...
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Transcript-wide identification and expression pattern analysis to comprehend the roles of AP2/ERF genes under development and abiotic stress in Trichosanthes kirilowii
BackgroundThe APETALA 2/ ethylene-responsive element binding factors ( AP2/ERF ), are thought to be associated with plant abiotic stress response, and...
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Identification and expression profile of dhurrin biosynthesis pathway genes in sorghum vegetative tissues
Sorghum is considered a fifth major cereal, widely used as a multipurpose crop worldwide. The use of sorghum as a major forage crop is limited due to...
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Identification and expression profiling of proline metabolizing genes in Arabidopsis thaliana and Oryza sativa to reveal their stress-specific transcript alteration
The amino acid, proline, is utilized by different organisms to offset cellular imbalances caused by environmental stresses. The wide use of proline...
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Gene expression profile for different susceptibilities to sound stimulation: a comparative study on brainstems between two inbred laboratory mouse strains
BackgroundDBA/1 mice have a higher susceptibility to generalized audiogenic seizures (AGSz) and seizure-induced respiratory arrest (S-IRA) than...
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Shifts in the rhizosphere microbiome and exudation profile of avocado (Persea americana Mill.) during infection by Phytophthora cinnamomi and in presence of a biocontrol bacterial strain
BackgroundRhizosphere microbiomes are fundamental for plant health, development, and productivity, but can be altered by the incidence of soil-borne...
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Native Circular RNA Pulldown Method to Simultaneously Profile RNA and Protein Interactions
Circular RNAs (circRNAs) are a widespread, cell-, tissue-, and disease-specific class of largely non-coding RNA transcripts. These single-stranded,...
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Metabolic changes of Issatchenkia orientalis under acetic acid stress by transcriptome profile using RNA-sequencing
Issatchenkia orientalis ( I. orientalis ) is tolerant to various environmental stresses especially acetic acid stress in wine making. However, limited...
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Profile-based proteomic investigation of unintended effects on transgenic and gamma radiation induced mutant soybean plants
GM risk assessments are crucial for determination and prevention of potential adverse effects through early detection and proper evaluation of...
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Genome-wide identification and expression profile analysis of metal tolerance protein gene family in Eucalyptus grandis under metal stresses
Metal tolerance proteins (MTPs) as Me 2+ /H + (K + ) antiporters participate in the transport of divalent cations, leading to heavy metal stress resistance...
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Investigating the genetic profile of familial atypical cystic fibrosis patients (DeltaF508-CFTR) with neonatal biliary atresia
Biliary atresia (BA) is a progressive inflammatory process of the biliary tree resulting in biliary obstruction. No single known genetic or...
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Global gene expression profile and functional analysis reveal the conservation of reproduction-associated gene networks in Gossypium hirsutum
Key messageLastly, the bZIP gene family encompasses genes that have been reported to play a role in flower development, such as bZIP14 ( FD )....
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Sierra: discovery of differential transcript usage from polyA-captured single-cell RNA-seq data
High-throughput single-cell RNA-seq (scRNA-seq) is a powerful tool for studying gene expression in single cells. Most current scRNA-seq...
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Transcriptional profile of oil palm pathogen, Ganoderma boninense, reveals activation of lignin degradation machinery and possible evasion of host immune response
BackgroundThe white-rot fungi in the genus Ganoderma interact with both living and dead angiosperm tree hosts. Two Ganoderma species, a North...
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Alterations in the estrogen receptor profile of cardiovascular tissues during aging
Estrogen exerts protective effects on the cardiovascular system via three known estrogen receptors: alpha (ERα), beta (ERß), and the G...
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Untargeted metabolomics in primary murine bone marrow stromal cells reveals distinct profile throughout osteoblast differentiation
IntroductionSkeletal homeostasis is an exquisitely regulated process most directly influenced by bone resorbing osteoclasts, bone forming...
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Genome-wide systematic characterization of the NRT2 gene family and its expression profile in wheat (Triticum aestivum L.) during plant growth and in response to nitrate deficiency
BackgroundWheat ( Triticum aestivum L.) is a major cereal crop that is grown worldwide, and it is highly dependent on sufficient N supply. The...
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Direct measurement of engineered cancer mutations and their transcriptional phenotypes in single cells
Genome sequencing studies have identified numerous cancer mutations across a wide spectrum of tumor types, but determining the phenotypic consequence...
