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  1. Single-cell profiling of immune cells after neoadjuvant pembrolizumab and chemotherapy in IIIA non-small cell lung cancer (NSCLC)

    The combination of immune checkpoint inhibitors (ICIs) with chemotherapy (chemoimmunotherapy) in the neoadjuvant setting have achieved favorable...

    Zhenzhen Hui, Jiali Zhang, ... **ubao Ren in Cell Death & Disease
    Article Open access 13 July 2022
  2. BD Rhapsody™ Single-Cell Analysis System Workflow: From Sample to Multimodal Single-Cell Sequencing Data

    Advancements in single-cell sequencing have revolutionized our understanding of complex biological systems such as the immune system and allowed us...
    Jannes Ulbrich, Vadir Lopez-Salmeron, Ian Gerrard in Single Cell Transcriptomics
    Protocol 2023
  3. Single-cell metabolic profiling reveals subgroups of primary human hepatocytes with heterogeneous responses to drug challenge

    Background

    Xenobiotics are primarily metabolized by hepatocytes in the liver, and primary human hepatocytes are the gold standard model for the...

    Eva Sanchez-Quant, Maria Lucia Richter, ... Celia Pilar Martinez-Jimenez in Genome Biology
    Article Open access 17 October 2023
  4. Single-cell profiling reveals molecular basis of malignant phenotypes and tumor microenvironments in small bowel adenocarcinomas

    Small bowel adenocarcinomas (SBAs) are rare malignant tumors with a high mortality rate, and their molecular characteristics are still largely...

    **gwei Yang, **n Zhou, ... Fuchou Tang in Cell Discovery
    Article Open access 14 September 2022
  5. Benchmarking and integrating human B-cell receptor genomic and antibody proteomic profiling

    Immunoglobulins (Ig), which exist either as B-cell receptors (BCR) on the surface of B cells or as antibodies when secreted, play a key role in the...

    Khang Lê Quý, Maria Chernigovskaya, ... Victor Greiff in npj Systems Biology and Applications
    Article Open access 12 July 2024
  6. First single-cell profiling of gut eosinophils

    Charlotte Harrison in Lab Animal
    Article 02 February 2023
  7. Single-cell immune repertoire analysis

    Single-cell T cell and B cell antigen receptor-sequencing data analysis can potentially perform in-depth assessments of adaptive immune cells that...

    Sergio E. Irac, Megan Sioe Fei Soon, ... Zewen Kelvin Tuong in Nature Methods
    Article 18 April 2024
  8. Single Cell RNA-Sequencing in Arabidopsis Root Tissues

    Droplet-based single-cell RNA-sequencing (scRNA-seq)Single-cell RNA-sequencing (scRNA-seq) empowers transcriptomicTranscriptomics profiling with an...
    Yuji Ke, Max Minne, ... Bert De Rybel in Plant Gene Regulatory Networks
    Protocol 2023
  9. Single-Cell Transcriptomic Analysis of Mononuclear Cell Populations in Skeletal Muscle

    Skeletal muscle possesses a remarkable regenerative capacity, mainly relying on a population of undifferentiated and unipotent muscle progenitors,...
    Gary J. He, Johanna Galvis, ... Fabien Le Grand in Skeletal Muscle Stem Cells
    Protocol 2023
  10. Profiling epigenetic age in single cells

    DNA methylation dynamics have emerged as a promising biomarker of mammalian aging, with multivariate machine learning models (‘epigenetic clocks’)...

    Alexandre Trapp, Csaba Kerepesi, Vadim N. Gladyshev in Nature Aging
    Article 09 December 2021
  11. Inferring single-cell copy number profiles through cross-cell segmentation of read counts

    Background

    Copy number alteration (CNA) is one of the major genomic variations that frequently occur in cancers, and accurate inference of CNAs is...

    Furui Liu, Fangyuan Shi, Zhenhua Yu in BMC Genomics
    Article Open access 02 January 2024
  12. Single cell RNA-seq: a novel tool to unravel virus-host interplay

    Over the last decade, single cell RNA sequencing (scRNA-seq) technology has caught the momentum of being a vital revolutionary tool to unfold...

    Harsh Rajeshbhai Jogi, Nabaneeta Smaraki, ... Manjit Panigrahi in VirusDisease
    Article 09 March 2024
  13. Single-cell profiling of proteins and chromatin accessibility using PHAGE-ATAC

    Multimodal measurements of single-cell profiles are proving increasingly useful for characterizing cell states and regulatory mechanisms. In the...

    Evgenij Fiskin, Caleb A. Lareau, ... Aviv Regev in Nature Biotechnology
    Article 21 October 2021
  14. Single-cell profiling reveals the trajectory of FOLR2-expressing tumor-associated macrophages to regulatory T cells in the progression of lung adenocarcinoma

    An immunosuppressive microenvironment enriched with regulatory CD4 + T lymphocytes (Tregs) facilitates the progression of lung adenocarcinoma (LUAD)....

    Chan **ang, Min Zhang, ... Yuchen Han in Cell Death & Disease
    Article Open access 02 August 2023
  15. Protoplast Isolation for Plant Single-Cell RNA-seq

    The growth and development of plants depends on diversified gene expression in different cell types. Compared to traditional bulk RNA sequencing,...
    Shulin Ren, Ying Wang in Flower Development
    Protocol 2023
  16. Simultaneous single-cell three-dimensional genome and gene expression profiling uncovers dynamic enhancer connectivity underlying olfactory receptor choice

    The simultaneous measurement of three-dimensional (3D) genome structure and gene expression of individual cells is critical for understanding a...

    Honggui Wu, Jiankun Zhang, ... X. Sunney **e in Nature Methods
    Article Open access 15 April 2024
  17. High-throughput single-cell transcriptomics of bacteria using combinatorial barcoding

    Microbial split-pool ligation transcriptomics (microSPLiT) is a high-throughput single-cell RNA sequencing method for bacteria. With four...

    Karl D. Gaisser, Sophie N. Skloss, ... Anna Kuchina in Nature Protocols
    Article 17 June 2024
  18. Scalable in situ single-cell profiling by electrophoretic capture of mRNA using EEL FISH

    Methods to spatially profile the transcriptome are dominated by a trade-off between resolution and throughput. Here we develop a method named...

    Lars E. Borm, Alejandro Mossi Albiach, ... Sten Linnarsson in Nature Biotechnology
    Article Open access 22 September 2022
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