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  1. Identification of a peptide motif that potently inhibits two functionally distinct subunits of Shiga toxin

    Shiga toxin (Stx) is a major virulence factor of enterohemorrhagic Escherichia coli , which causes fatal systemic complications. Here, we identified a...

    Miho Watanabe-Takahashi, Masakazu Tamada, ... Kiyotaka Nishikawa in Communications Biology
    Article Open access 10 May 2021
  2. Fusion of the SRDX motif to OsPIL11 or OsPIL16 causes rice constitutively photomorphogenic phenotypes in darkness

    Dark-grown seedlings develop skotomorphogenesis. Because of the development of rice direct seeding cultivation systems, there is an increasing need...

    Ya** Li, Fang Zhang, ... **anzhi **e in Plant Growth Regulation
    Article 12 November 2021
  3. RNA binding motif 47 (RBM47): emerging roles in vertebrate development, RNA editing and cancer

    RNA-binding proteins (RBPs) are critical players in the post-transcriptional regulation of gene expression and are associated with each event in RNA...

    Pavan Kumar Mysuru Shivalingappa, Vaishali Sharma, ... Sharmila A. Bapat in Molecular and Cellular Biochemistry
    Article 09 September 2021
  4. Genome-wide analysis of AP2/ERF transcription factors that regulate fruit development of Chinese prickly ash

    Background

    AP2/ERF is a large family of plant transcription factor proteins that play essential roles in signal transduction, plant growth and...

    Lei Ma, Qianqian Shi, ... Anzhi Wei in BMC Plant Biology
    Article Open access 15 June 2024
  5. Structural, functional and evolutionary analysis of wheat WRKY45 protein: a combined bioinformatics and MD simulation approach

    Bread wheat ( Triticum aestivum L.) is the world's as well as India’s second-most important cereal crop. It is an allohexaploid composed of three...

    Prashant Ranjan, Ashok Yadav, ... Ganga Prasad Singh in Cereal Research Communications
    Article 01 June 2023
  6. Inhibition of integrin binding to ligand arg-gly-asp motif induces AKT-mediated cellular senescence in hepatic stellate cells

    Background & aims

    Hepatic stellate cells (HSCs) play an essential role in liver fibrogenesis. The induction of cellular senescence has been reported...

    Kensuke Kitsugi, Hidenao Noritake, ... Kazuhito Kawata in Molecular and Cellular Biochemistry
    Article 30 October 2023
  7. Genome-wide identification and evolutionary analysis of the NRAMP gene family in the AC genomes of Brassica species

    Background

    Brassica napus , a hybrid resulting from the crossing of Brassica rapa and Brassica oleracea , is one of the most important oil crops....

    Yuquan Zhao, Qijun **e, ... Mingli Yan in BMC Plant Biology
    Article Open access 23 April 2024
  8. DNA vaccine dual-expressing viral hemorrhagic septicemia virus glycoprotein and C-C motif chemokine ligand 19 induces the expression of immune-related genes in zebrafish (Danio rerio)

    Glycoprotein (G protein)-based DNA vaccines are effective in protecting aquaculture fish from rhabdoviruses but the degree of immune response they...

    **-Young Kim, Hyoung Jun Kim, ... Se Ryun Kwon in Journal of Microbiology
    Article 01 August 2022
  9. Tripartite Motif Containing 3 inhibits the aggressive behaviors of papillary thyroid carcinoma and indicates lower recurrence risk

    Background

    Tripartite Motif Containing 3 (TRIM3) has been reported to be downregulated in several malignancies. However, its prognostic significance...

    Yubao Song, Zefeng Gao, ... Caihong Zheng in Genes & Genomics
    Article 03 December 2021
  10. Large-scale analysis of the N-terminal regulatory elements of the kinase domain in plant Receptor-like kinase family

    Background

    The N-terminal regulatory element (NRE) of Receptor-like kinases (RLKs), consisting of the juxtamembrane segment in receptor kinases (RKs)...

    Qiong Fu, Qian Liu, ... He** Zheng in BMC Plant Biology
    Article Open access 06 March 2024
  11. The SEEL motif and members of the MYB-related REVEILLE transcription factor family are important for the expression of LORELEI in the synergid cells of the Arabidopsis female gametophyte

    Synergid cells in the micropylar end of the female gametophyte are required for critical cell–cell signaling interactions between the pollen tube and...

    Jennifer A. Noble, Alex Seddon, ... Ravishankar Palanivelu in Plant Reproduction
    Article 29 October 2021
  12. Genome-wide identification and evolutionary analysis of WOX gene family in cucurbit crops

    The WUSCHEL-related homeobox (WOX) gene family is essential for plant growth and development. However, the identification and evolutionary analysis...

    Chun Li, Zhen He, ... **aojun Liu in Horticulture, Environment, and Biotechnology
    Article 30 October 2023
  13. Comparative in silico analysis of ascorbate peroxidase protein sequences in different plant species

    Ascorbate peroxidase enzymes play a very important role by balancing reactive oxygen species in cells, mainly H 2 O 2 . The present study aims to perform...

    Yudith García-Ramírez, Laura Elena Iñiguez Muñoz in Genetic Resources and Crop Evolution
    Article 15 September 2023
  14. Identification and promoter analysis of a GA-stimulated transcript 1 gene from Jatropha curcas

    Key message

    Overexpression of JcGAST1 promotes plant growth but inhibits pistil development. The pyrimidine box and CGTCA motif of the JcGAST1 ...

    Shikang Lei, Liangqing Zhao, ... Gang Xu in Plant Cell Reports
    Article 24 June 2023
  15. Structures of the ApoL1 and ApoL2 N-terminal domains reveal a non-classical four-helix bundle motif

    Apolipoprotein L1 (ApoL1) is a circulating innate immunity protein protecting against trypanosome infection. However, two ApoL1 coding variants are...

    Mark Ultsch, Michael J. Holliday, ... Daniel Kirchhofer in Communications Biology
    Article Open access 27 July 2021
  16. Genome-wide identification and analysis of superoxide dismutase genes in jute (Corchorus spp.)

    Superoxide dismutase (SOD) is an antioxidant enzyme found ubiquitously in all living organisms. It plays a protective role against reactive oxygen...

    Nafisa Tazrin Mridula, Nazmir Binta Alam, ... Tanvir Hossain Emon in Journal of Crop Science and Biotechnology
    Article 11 March 2024
  17. Genome-wide characterization and analysis of the CCT motif family genes in soybean (Glycine max)

    Main conclusion

    Soybean possesses 19 CMF genes which mainly arose from duplication events. Their features and motifs are highly conserved but...

    Diego A. Mengarelli, María Inés Zanor in Planta
    Article 03 January 2021
  18. TFscope: systematic analysis of the sequence features involved in the binding preferences of transcription factors

    Characterizing the binding preferences of transcription factors (TFs) in different cell types and conditions is key to understand how they...

    Raphaël Romero, Christophe Menichelli, ... Laurent Bréhélin in Genome Biology
    Article Open access 10 July 2024
  19. RNA interference-mediated knockdown of tripartite motif containing 44 suppresses cervical cancer growth in vitro and in vivo

    Background

    Tripartite motif containing 44 (TRIM44) is an atypical member of the TRIM protein family that has been reported to be aberrantly...

    Rui Liu, Yanan Ma, ... Caihong Yang in Molecular & Cellular Toxicology
    Article 10 January 2022
  20. Functional analysis of recurrent CDC20 promoter variants in human melanoma

    Small nucleotide variants in non-coding regions of the genome can alter transcriptional regulation, leading to changes in gene expression which can...

    Paula M. Godoy, Abimbola Oyedeji, ... Charles K. Kaufman in Communications Biology
    Article Open access 29 November 2023
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