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Whole-Genome Bisulfite Sequencing for Detection of DNA Methylation in Crops
DNA methylations are well known for their regulatory functions and involved in various biological processes. Due to its great importance, the...
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Whole-genome sequencing and antimicrobial potential of bacteria isolated from Polish honey
AbstractThe aim of this study was the whole-genome analysis and assessment of the antimicrobial potential of bacterial isolates from honey harvested...
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Whole-genome sequencing and comparative genomics reveal candidate genes associated with quality traits in Dioscorea alata
BackgroundQuality traits are essential determinants of consumer preferences. Dioscorea alata (Greater Yam), is a starchy tuber crop in tropical...
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CamPype: an open-source workflow for automated bacterial whole-genome sequencing analysis focused on Campylobacter
BackgroundThe rapid expansion of Whole-Genome Sequencing has revolutionized the fields of clinical and food microbiology. However, its implementation...
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A random priming amplification method for whole genome sequencing of SARS-CoV-2 virus
BackgroundNon-targeted whole genome sequencing is a powerful tool to comprehensively identify constituents of microbial communities in a sample....
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Targeted Identification of Rice Grain-Associated Gene Allelic Variation Through Mutation Induction, Targeted Sequencing, and Whole Genome Sequencing Combined with a Mixed-Samples Strategy
BackgroundThe mining of new allelic variation and the induction of new genetic variability are the basis for improving breeding efficiency.
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Isolation, whole genome sequencing and application of a broad-spectrum Salmonella phage
Salmonella is considered as one of the most common zoonotic /foodborne pathogens in the world. The application of bacteriophages as novel...
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Genome-wide detection of copy number variation in American mink using whole-genome sequencing
BackgroundCopy number variations (CNVs) represent a major source of genetic diversity and contribute to the phenotypic variation of economically...
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MycoSNP: A Portable Workflow for Performing Whole-Genome Sequencing Analysis of Candida auris
Candida auris is an urgent public health threat characterized by high drug-resistant rates and rapid spread in healthcare settings worldwide. As part...
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Integrating metabolomics and whole genome sequencing to elucidate the metabolic pathways in Methylosinus trichosporium OB3b
Methanotrophs, relying on methane as their primary carbon source, are renowned for their exceptional capacity to generate a diverse range of...
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A paired-end whole-genome sequencing approach enables comprehensive characterization of transgene integration in rice
Efficient, accurate molecular characterization of genetically modified (GM) organisms is challenging, especially for those transgenic events...
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Whole-Genome Methylation Sequencing of Large Yellow Croaker (Larimichthys crocea) Liver Under Hypoxia and Acidification Stress
Large yellow croaker ( Larimichthys crocea ) is an important aquaculture species in China. This study analysed whole-genome methylation differences in...
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vSNP: a SNP pipeline for the generation of transparent SNP matrices and phylogenetic trees from whole genome sequencing data sets
BackgroundSeveral single nucleotide polymorphism (SNP) pipelines exist, each offering its own advantages. Among them and described here is vSNP that...
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Whole genome sequencing and analysis of selenite-reducing bacteria Bacillus paralicheniformis SR14 in response to different sugar supplements
The biosynthetic process of selenium nanoparticles (SeNPs) by specific bacterial strain, whose growth directly affects the synthesis efficiency, has...
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Genome sequencing of captive white tigers from Bangladesh
ObjectivesThe Bengal tiger Panthera tigris tigris , is an emblematic animal for Bangladesh. Despite being the apex predator in the wild, their number...
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msPIPE: a pipeline for the analysis and visualization of whole-genome bisulfite sequencing data
BackgroundDNA methylation is an important epigenetic modification that is known to regulate gene expression. Whole-genome bisulfite sequencing (WGBS)...
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Genetic determinants of Biofilm formation of Helicobacter pylori using whole-genome sequencing
BackgroundInfection with Helicobacter pylori as the cause of gastric cancer is a global public health concern. In addition to protecting germs from...
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Exploring multidrug-resistant Klebsiella pneumoniae antimicrobial resistance mechanisms through whole genome sequencing analysis
BackgroundAntibiotic-resistant Klebsiella pneumoniae has emerged as a critical public health threat worldwide. Understanding the antimicrobial...
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Whole-genome sequencing and analysis of Streptomyces strains producing multiple antinematode drugs
BackgroundNematodes are parasitic animals that cause over 100 billion US dollars loss in agricultural business. The whole-genomes of two Streptomyces ...
