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  1. NRPS and PKS Gene Analysis in Cyanobacteria Using PCR

    Cyanobacteria are ancient prokaryotes with the capacity to perform oxygenic photosynthesis and can be found in a great diversity of habitats,...
    Nazar Reehana, Mohamed Yousuff Mohamed Imran, ... D. Dhanasekaran in Protocols for Cyanobacteria Sampling and Detection of Cyanotoxin
    Chapter 2023
  2. Gene–gene interaction detection with deep learning

    The extent to which genetic interactions affect observed phenotypes is generally unknown because current interaction detection approaches only...

    Tianyu Cui, Khaoula El Mekkaoui, ... Samuel Kaski in Communications Biology
    Article Open access 12 November 2022
  3. Extensive remodeling of sugar metabolism through gene loss and horizontal gene transfer in a eukaryotic lineage

    Background

    In yeasts belonging to the subphylum Saccharomycotina, genes encoding components of the main metabolic pathways, like alcoholic...

    Ana Pontes, Francisca Paraíso, ... Paula Gonçalves in BMC Biology
    Article Open access 30 May 2024
  4. A Potential New Source of Extreme Resistance to Potato Virus Y in the Potato Variety Bistra

    Potato virus Y (PVY) is a common and devastating pathogen of potato worldwide and insecticide control alone for aphid vectors is not effective due to...

    Gregory L. Elison, Jaebum Park, ... Jonathan L. Whitworth in American Journal of Potato Research
    Article 26 April 2024
  5. Genetic Engineering and Gene Editing for Targeted Trait Modifications

    In the twenty-first century, the scientific community faces the challenge of ensuring food security for an increasing population while tackling...
    Tannu Ruhil, Hukum Singh, Santan Barthwal in Plant Functional Traits for Improving Productivity
    Chapter 2024
  6. Genome-wide association map** combined with gene-based haplotype analysis identify a novel gene for shoot length in rice (Oryza sativa L.)

    Key message

    Genome-wide association map** revealed a novel QTL for shoot length across multiple environments. Its causal gene, LOC_Os01g68500 , was...

    Tifeng Yang, **gfang Dong, ... Shaohong Zhang in Theoretical and Applied Genetics
    Article Open access 20 November 2023
  7. Crop-GPA: an integrated platform of crop gene-phenotype associations

    With the increasing availability of large-scale biology data in crop plants, there is an urgent demand for a versatile platform that fully mines and...

    Yujia Gao, Qian Zhou, ... Zhenyu Yue in npj Systems Biology and Applications
    Article Open access 12 February 2024
  8. Cryosphere: a frozen home of microbes and a potential source for drug discovery

    The world is concerned about the emergence of pathogens and the occurrence and spread of antibiotic resistance among pathogens. Drug development...

    Sahib Zada, Mohsin Khan, ... Muhammad Rafiq in Archives of Microbiology
    Article 28 March 2024
  9. An efficient virus-induced gene silencing of PDS gene in Solanum lycopersicum (cv. Rio Grande) and its functional analysis

    Solanum lycopersicum L. is the second most significant fruit crop after potato. It is a rich source of various vitamins, dietary components, and...

    Iqra Mehboob, Muhammad Mughees, ... Mohammad Maroof Shah in Brazilian Journal of Botany
    Article 18 October 2023
  10. Plastid DNA is a major source of nuclear genome complexity and of RNA genes in the orphan crop moringa

    Background

    Unlike Transposable Elements (TEs) and gene/genome duplication, the role of the so-called nuclear plastid DNA sequences (NUPTs) in sha**...

    Juan Pablo Marczuk-Rojas, Antonio Salmerón, ... Lorenzo Carretero-Paulet in BMC Plant Biology
    Article Open access 22 May 2024
  11. Genetically Modified and Gene-Edited Food Crops: Recent Status and Future Prospects

    Genetically modified (GM) and gene-edited (GE) food crops have emerged as transformative technologies in agriculture, offering potential solutions to...
    Chapter 2024
  12. Particulate matter-induced gene expression patterns in human-derived cells based on 11 public gene expression datasets

    Background

    Exposure to particulate matter (PM) and house dust mite (HDM) can change the expression patterns of inflammation-, oxidative stress-, and...

    Sanghyun Roh, Jeongeun Hwang, ... Jeong-An Gim in Genes & Genomics
    Article 11 May 2024
  13. Coffee Cell Suspensions as a Platform for Transient Gene Expression Analysis

    Coffea arabica L. is a crucial crop globally, but its genetic homogeneity leads to its susceptibility to diseases and pests like the coffee berry...
    Andrés Gatica-Arias, Jimmy Villalta-Villalobos, Luiz Filipe Pereira in Plant Functional Genomics
    Protocol 2024
  14. Secondary metabolites from cyanobacteria: source, chemistry, bioactivities, biosynthesis and total synthesis

    Cyanobacteria are an important source of structurally diverse natural products with excellent biological activities. Until now, amounts of...

    Yanchun He, Ying Chen, ... Bin Yang in Phytochemistry Reviews
    Article 22 April 2024
  15. Variability of the Tannase Gene from Extreme Environments Uncultivable Microorganisms

    Tannase or tannin acyl hydrolase (EC. 3.1.120) has diverse potential applications in the food industry, because of this, it is necessary to count...
    F. Lara-Victoriano, S. D. Nery-Flores, ... R. Rodríguez-Herrera in Microbial Biodiversity, Biotechnology and Ecosystem Sustainability
    Chapter 2023
  16. Ammonia-oxidizing bacteria and archaea exhibit differential nitrogen source preferences

    Ammonia-oxidizing microorganisms (AOM) contribute to one of the largest nitrogen fluxes in the global nitrogen budget. Four distinct lineages of AOM:...

    Wei Qin, Stephany P. Wei, ... Mari-Karoliina H. Winkler in Nature Microbiology
    Article 31 January 2024
  17. Monitoring Mechano-Regulation of Gene Expression by RNA Sequencing

    The advent of high-throughput sequencing techniques has revolutionized biological research. One such method is RNA sequencing, which has become a...
    Yekaterina A. Miroshnikova in Mechanobiology
    Protocol 2023
  18. Quantitative Real-Time PCR Method to Evaluate Gene Expression in Zebrafish Embryos

    The fast zebrafish embryonic development offers an opportunity for the study of genes crucial for developmental processes. Several genes associated...
    Merih Beler, Derya Cansız, ... Ebru Emekli-Alturfan in Teratogenicity Testing
    Protocol 2024
  19. Endophytic fungi as a potential source of anti-cancer drug

    Endophytes are considered one of the major sources of bioactive compounds used in different aspects of health care including cancer treatment. When...

    Sukanya Sonowal, Urvashee Gogoi, ... Ratul Nath in Archives of Microbiology
    Article 26 February 2024
  20. Gene Targeting in Rat Embryonic Stem Cells

    Rat germline-competent embryonic stem (ES) cell lines have been available since 2008, and rat models with targeted mutations have been successfully...
    Hongsheng Men, Daniel J. Davis, Elizabeth C. Bryda in Transgenesis
    Protocol 2023
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