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1. Gene Co-expression Network Analysis to Mine Genes Involved in Plant Secondary Metabolite Biosynthesis and Regulation

   Plants produce diverse specialized metabolites (SMs) that do not participate in plant growth and development but help them adapt to various...

   Muhammad Ahmad in Plant Functional Genomics

   Protocol 2024
   

2. Quorum quenchers affect the virulence regulation of non-mucoid, mucoid and heavily mucoid biofilms co-cultured on cell lines

   Biofilm formation conferring pathogenicity is a survival strategy for Pseudomonas aeruginosa . P. aeruginosa ’s virulence may differ due to differences...

   Rachith Kalgudi, Roya Tamimi, ... Tajalli Keshavarz in Applied Microbiology and Biotechnology

   Article Open access 30 October 2021
   

3. Regulation of CO₂ fluxes along gradients of water saturation in irrigation canal sediments

   Hydrological intermittency affects sediment biogeochemistry, organic carbon (OC) metabolism and carbon dioxide (CO ₂ ) emission but the study of the...

   Beatrice Palmia, Stefano Leonardi, ... Marco Bartoli in Aquatic Sciences

   Article Open access 18 January 2021
   

4. Delineating the mechanisms of elevated CO₂ mediated growth, stress tolerance and phytohormonal regulation in plants

   Global climate change has drastically affected natural ecosystems and crop productivity. Among several factors of global climate change, CO ₂ is...

   Swarnendu Roy, Piyush Mathur in Plant Cell Reports

   Article 24 June 2021
   

5. Deciphering the biochemical regulation of metabolic pathways in abating stress-induced damages during co-exposure of arsenic and fluoride in a non-aromatic and an aromatic rice variety

   The aim of the current work was to decipher the systemic damage and biochemical defense machinery due to combined arsenic (5 mg L ⁻¹ Na ₃ AsO ₄ ) and...

   Ankur Singh, Aryadeep Roychoudhury in Physiology and Molecular Biology of Plants

   Article 23 September 2023
   

6. DiNeR: a Differential graphical model for analysis of co-regulation Network Rewiring

   Background

   During transcription, numerous transcription factors (TFs) bind to targets in a highly coordinated manner to control the gene expression....

   **g Zhang, Jason Liu, ... Mark Gerstein in BMC Bioinformatics

   Article Open access 02 July 2020
   

7. Co-expression network analysis uncovers key candidate genes related to the regulation of volatile esters accumulation in Woodland strawberry

   Main conclusion

   FveERF (FvH4_5g04470.1), FveAP2 (FvH4_1g16370.1) and FveWRKY (FvH4_6g42870.1) might be involved in fruit maturation of strawberry....

   Zekun Li, Zhennan Wang, ... Qingxi Chen in Planta

   Article 19 September 2020
   

8. Co-regulation map of the human proteome enables identification of protein functions

   Assigning functions to the vast array of proteins present in eukaryotic cells remains challenging. To identify relationships between proteins, and...

   Georg Kustatscher, Piotr Grabowski, ... Juri Rappsilber in Nature Biotechnology

   Article 04 November 2019
   

9. Co-action of ABA, brassinosteriod hormone pathways and differential regulation of different transcript isoforms during cold-and-dark induced senescence in Arabidopsis

   Senescence in nature is augmented by multiple abiotic factors such as aging, cold and dark simultaneously. To identify unique components involved in...

   Madhusmita Panigrahy, Anamika Singh, ... Kishore C. S. Panigrahi in Journal of Plant Biochemistry and Biotechnology

   Article 26 May 2021
   

10. Co-regulation Role of Endogenous Hormones and Transcriptomics Profiling Under Cold Stress in Tetrastigma hemsleyanum

    Tetrastigma hemsleyanum Diels et Gilg is a valuable medicinal herb. Chilling sensitivity is the major limiting factor of the artificial cultivation...

    **n Peng, Mingjie Li, ... Zhongyi Zhang in Journal of Plant Growth Regulation

    Article 26 October 2020
    

11. Co-regulation of Auxin and Cytokinin in Anthocyanin Accumulation During Natural Development of Purple Wheat Grains

    Purple-colored wheat is a kind of wheat with purple-colored grains that contain significant levels of anthocyanins, and anthocyanins benefit human...

    Luhua Li, Gui** Yang, ... Ruhong Xu in Journal of Plant Growth Regulation

    Article 06 October 2020
    

12. Identification of Plant Co-regulatory Modules Using CoReg

    Regulatory network is often characterized by complex interactions between transcription factors (TFs) and target genes. The synergistic regulations...

    Qi Song, Song Li in Transcription Factor Regulatory Networks

    Protocol 2023
    

13. Impact of Co-chaperones and Posttranslational Modifications Toward Hsp90 Drug Sensitivity

    Posttranslational modifications (PTMs) regulate myriad cellular processes by modulating protein function and protein-protein interaction. Heat shock...

    Sarah J. Backe, Mark R. Woodford, ... Mehdi Mollapour in The Networking of Chaperones by Co-Chaperones

    Chapter 2023
    

14. Flowering onset time is regulated by microRNA-mediated trehalose-6-phosphate signaling in Cajanus cajan L. under elevated CO₂

    CO ₂ levels are known to have an impact on plant development and physiology. In the current study, we have investigated the effect of elevated CO ₂ on...

    Divya K. Unnikrishnan, Rachapudi V. Sreeharsha, ... Attipalli R. Reddy in Physiology and Molecular Biology of Plants

    Article 01 March 2024
    

15. Characterizing Post-transcriptional Modifications of circRNAs to Investigate Biogenesis and Translation

    Recent studies have shown that circular RNAs (circRNAs) are decorated with N6-methyladenosine (m6A), a co-transcriptional modification known to...

    Gaia Di Timoteo, Dario Dattilo, Irene Bozzoni in Circular RNAs

    Protocol 2024
    

16. Density regulation of co-occurring herbivores via two indirect effects mediated by biomass and non-specific induced plant defenses

    Two herbivorous species that share a single plant can interact indirectly with one another, even without direct interaction. One type of indirect...

    Atsushi Yamauchi, Yusuke Ikegawa, ... Toshiyuki Namba in Theoretical Ecology

    Article 26 August 2020
    

17. Cdc37 as a Co-chaperone to Hsp90

    The co-chaperone p50/Cdc37 is an important partner for Hsp90, assisting in molecular chaperone activities, particularly with regard to the regulation...

    Thomas L. Prince, Benjamin J. Lang, ... Stuart K. Calderwood in The Networking of Chaperones by Co-Chaperones

    Chapter 2023
    

18. Targeting Transcription Factors in Cancer: From “Undruggable” to “Druggable”

    Deregulation of transcription factors is critical to hallmarks of cancer. Genetic mutations, gene fusions, amplifications or deletions, epigenetic...

    Zhipeng Tao, Xu Wu in Transcription Factor Regulatory Networks

    Protocol 2023
    

19. Identification of co-expressed genes and immune infiltration features related to the progression of atherosclerosis

    Atherosclerosis is a chronic inflammatory disease that affects arterial walls and is a leading cause of cardiovascular disease. Gene co-expression...

    Junqing Gu, Wenwei Yang, ... Danqing Ying in Journal of Applied Genetics

    Article 24 November 2023
    

20. Regulation of Notch signaling by non-muscle myosin II Zipper in Drosophila

    The Notch pathway is an evolutionarily conserved signaling system that is intricately regulated at multiple levels and it influences different...

    Dipti Verma, Ankita Singh, ... Ashim Mukherjee in Cellular and Molecular Life Sciences

    Article Open access 24 April 2024