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  1. Gapr for large-scale collaborative single-neuron reconstruction

    Whole-brain analysis of single-neuron morphology is crucial for unraveling the complex structure of the brain. However, large-scale neuron...

    Lingfeng Gou, Yanzhi Wang, ... Jun Yan in Nature Methods
    Article 03 July 2024
  2. Gut microbiota Parabacteroides distasonis enchances the efficacy of immunotherapy for bladder cancer by activating anti-tumor immune responses

    Objective

    Bladder cancer(BCa) was a disease that seriously affects patients’ quality of life and prognosis. To address this issue, many researches...

    Benlin Wang, Yifeng Qiu, ... Peng Wu in BMC Microbiology
    Article Open access 03 July 2024
  3. Impact of captivity and natural habitats on gut microbiome in Epinephelus akaara across seasons

    Background

    The gut microbiota significantly influences the health and growth of red-spotted grouper ( Epinephelus akaara ), a well-known commercial...

    Hang Sun, Fangyi Chen, ... Ke-Jian Wang in BMC Microbiology
    Article Open access 03 July 2024
  4. Formic acid sandwich method is well-suited for filamentous fungi identification and improves turn around time using Zybio EXS2600 mass spectrometry

    Objectives

    Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) is extensively employed for the identification...

    Chongyang Wu, Ke** Ao, ... Dongdong Li in BMC Microbiology
    Article Open access 03 July 2024
  5. cBAF generates subnucleosomes that expand OCT4 binding and function beyond DNA motifs at enhancers

    The canonical BRG/BRM-associated factor (cBAF) complex is essential for chromatin opening at enhancers in mammalian cells. However, the nature of the...

    Marina C. Nocente, Anida Mesihovic Karamitsos, ... Matthieu GĂ©rard in Nature Structural & Molecular Biology
    Article 02 July 2024
  6. Structural basis of MALAT1 RNA maturation and mascRNA biogenesis

    The metastasis-associated lung adenocarcinoma transcript 1 (MALAT1) long noncoding RNA (lncRNA) has key roles in regulating transcription, splicing,...

    Ilias Skeparnias, Charles Bou-Nader, ... **wei Zhang in Nature Structural & Molecular Biology
    Article 02 July 2024
  7. fENko-Kae01 is a flagellum-specific jumbo phage infecting Klebsiella aerogenes

    Background

    Klebsiella aerogenes is an opportunistic pathogen that causes a wide variety of infections. Due to the rising problem of antibiotic...

    Kira Ranta, Mikael Skurnik, Saija Kiljunen in BMC Microbiology
    Article Open access 01 July 2024
  8. Single-base tiled screen unveils design principles of PspCas13b for potent and off-target-free RNA silencing

    The development of precise RNA-editing tools is essential for the advancement of RNA therapeutics. CRISPR (clustered regularly interspaced short...

    Wenxin Hu, Amit Kumar, ... Mohamed Fareh in Nature Structural & Molecular Biology
    Article Open access 01 July 2024
  9. Asymmetric apical domain states of mitochondrial Hsp60 coordinate substrate engagement and chaperonin assembly

    The mitochondrial chaperonin, mitochondrial heat shock protein 60 (mtHsp60), promotes the folding of newly imported and transiently misfolded...

    Julian R. Braxton, Hao Shao, ... Daniel R. Southworth in Nature Structural & Molecular Biology
    Article Open access 01 July 2024
  10. Correction: Study of the gut microbiome in Egyptian patients with Parkinson’s Disease

    Mohammad Mehanna, Suzan Abou-Raya, ... Essameldin AbdelKhaliq in BMC Microbiology
    Article Open access 01 July 2024
  11. Early intermediates in bacterial RNA polymerase promoter melting visualized by time-resolved cryo-electron microscopy

    During formation of the transcription-competent open complex (RPo) by bacterial RNA polymerases (RNAPs), transient intermediates pile up before...

    Ruth M. Saecker, Andreas U. Mueller, ... Seth A. Darst in Nature Structural & Molecular Biology
    Article 01 July 2024
  12. Alterations of the bile microbiome is associated with progression-free survival in pancreatic ductal adenocarcinoma patients

    Background

    Patients with pancreatic ductal adenocarcinoma (PDAC) display an altered oral, gastrointestinal, and intra-pancreatic microbiome compared...

    Hang Jiang, Yitong Tian, ... Yuhua Zhang in BMC Microbiology
    Article Open access 01 July 2024
  13. Predicting glycan structure from tandem mass spectrometry via deep learning

    Glycans constitute the most complicated post-translational modification, modulating protein activity in health and disease. However, structural...

    James Urban, Chunsheng **, ... Daniel Bojar in Nature Methods
    Article Open access 01 July 2024
  14. Taxonomic and phenotypic analysis of bifidobacteria isolated from IBD patients as potential probiotic strains

    Background

    Inflammatory Bowel Diseases (IBD) are a major public health issue with unclear aetiology. Changes in the composition and functionality of...

    Sabine Bosselaar, Lucile Dhelin, ... CĂ©line Monnet in BMC Microbiology
    Article Open access 29 June 2024
  15. Lipopeptides from Bacillus velezensis ZLP-101 and their mode of action against bean aphids Acyrthosiphon pisum Harris

    Background

    Natural products are important sources for the discovery of new biopesticides to control the worldwide destructive pests Acyrthosiphon...

    Qiuyue Liu, Wenya Zhao, ... Li** Zhang in BMC Microbiology
    Article Open access 29 June 2024
  16. Gut fungi of black-necked cranes (Grus nigricollis) respond to dietary changes during wintering

    Background

    Migratory birds exhibit heterogeneity in foraging strategies during wintering to cope with environmental and migratory pressures, and gut...

    Wenhao Li, Lijun Cheng, ... Junsong Zhao in BMC Microbiology
    Article Open access 29 June 2024
  17. Mating Disruption of a Flighted Spongy Moth, Lymantria Dispar Japonica (Motchulsky) in Japan

    Mating disruption of a flighted spongy moth, Lymantria dispar japonica (Motchulsky)(Lepidoptera: Lymantridae), with a synthetic version of its sex...

    Hiroyuki Minegishi, Akihiro Ohashi, Kiyoshi Nakamuta in Journal of Chemical Ecology
    Article 29 June 2024
  18. Develo** Oak Buds Produce Volatile Emissions in Response to Herbivory by Freshly Hatched Caterpillars

    Plant responses to damage by insectivorous herbivores are well-documented in mature leaves. The resulting herbivore-induced plant volatiles (HIPVs)...

    Jessica L. Graham, Michael Staudt, ... Samuel P. Caro in Journal of Chemical Ecology
    Article 29 June 2024
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