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  1. Exploring Prognostic Gene Factors in Breast Cancer via Machine Learning

    Breast cancer remains the most prevalent cancer in women. To date, its underlying molecular mechanisms have not been fully uncovered. The...

    QingLan Ma, Lei Chen, ... Yu-Dong Cai in Biochemical Genetics
    Article 21 February 2024
  2. Genome-wide association analyses of breast cancer in women of African ancestry identify new susceptibility loci and improve risk prediction

    We performed genome-wide association studies of breast cancer including 18,034 cases and 22,104 controls of African ancestry. Genetic variants at 12...

    Guochong Jia, Jie **, ... Wei Zheng in Nature Genetics
    Article 13 May 2024
  3. Unraveling the underlying pathogenic factors driving nonalcoholic steatohepatitis and hepatocellular carcinoma: an in-depth analysis of prognostically relevant gene signatures in hepatocellular carcinoma

    Background

    Nonalcoholic steatohepatitis (NASH) is a progressive manifestation of nonalcoholic fatty liver disease (NAFLD) that can lead to fibrosis,...

    Yuan Ni, Maoqing Lu, ... Dong Xue in Journal of Translational Medicine
    Article Open access 18 January 2024
  4. Genetically-informed prediction of short-term Parkinson’s disease progression

    Parkinson’s disease (PD) treatments modify disease symptoms but have not been shown to slow progression, characterized by gradual and varied motor...

    Hossein J. Sadaei, Aldo Cordova-Palomera, ... Ali Torkamani in npj Parkinson's Disease
    Article Open access 28 October 2022
  5. Recurrence mutation in RBBP8 gene causing non-syndromic autosomal recessive primary microcephaly; geometric simulation approach for insight into predicted computational models

    Abstract

    Primary microcephaly is a rare, congenital, and genetically heterogeneous disorder in which occipitofrontal head circumference is reduced by...

    Tahira Batool, Saba Irshad, ... Muhammad Sajid Hussain in Journal of Human Genetics
    Article 03 March 2023
  6. Functional evaluation of BRCA1/2 variants of unknown significance with homologous recombination assay and integrative in silico prediction model

    Numerous variants of unknown significance (VUSs) exist in hereditary breast and ovarian cancers. Although multiple methods have been developed to...

    Qianqian Guo, Shuting Ji, ... Shigeaki Sunada in Journal of Human Genetics
    Article 20 September 2023
  7. Genotype × environment interactions in gene regulation and complex traits

    Genotype × environment interactions (GxE) have long been recognized as a key mechanism underlying human phenotypic variation. Technological...

    Carly Boye, Shreya Nirmalan, ... Francesca Luca in Nature Genetics
    Article 10 June 2024
  8. A novel support vector machine-based 1-day, single-dose prediction model of genotoxic hepatocarcinogenicity in rats

    The development of a rapid and accurate model for determining the genotoxicity and carcinogenicity of chemicals is crucial for effective cancer risk...

    Min Gi, Shugo Suzuki, ... Hideki Wanibuchi in Archives of Toxicology
    Article 18 May 2024
  9. Genome-wide association study of thoracic aortic aneurysm and dissection in the Million Veteran Program

    The current understanding of the genetic determinants of thoracic aortic aneurysms and dissections (TAAD) has largely been informed through studies...

    Derek Klarin, Poornima Devineni, ... Scott M. Damrauer in Nature Genetics
    Article Open access 12 June 2023
  10. MiR-339-5p inhibits replication of porcine reproductive and respiratory syndrome virus by targeting viral gene regions

    Porcine reproductive and respiratory syndrome virus (PRRSV) is a variable virus, whose spread cannot be totally stopped by vaccination. PRRSV...

    Cuifang Ye, **nyan Cao, ... Yanbing Zhang in Virus Genes
    Article 18 February 2024
  11. In Silico Functional and Structural Analysis of Non-synonymous Single Nucleotide Polymorphisms (nsSNPs) in Human Paired Box 4 Gene

    In human genome, members of Paired box (PAX) transcription factor family are highly sequence-specific DNA-binding proteins. Among PAX gene family...

    Md. Mostafa Kamal, Md. Numan Islam, ... Md. Mahmudul Hasan in Biochemical Genetics
    Article 07 December 2023
  12. Cortical gene expression architecture links healthy neurodevelopment to the imaging, transcriptomics and genetics of autism and schizophrenia

    Human brain organization involves the coordinated expression of thousands of genes. For example, the first principal component (C1) of cortical...

    Richard Dear, Konrad Wagstyl, ... Petra E. Vértes in Nature Neuroscience
    Article Open access 22 April 2024
  13. Leveraging a neutrophil-derived PCD signature to predict and stratify patients with acute myocardial infarction: from AI prediction to biological interpretation

    Background

    Programmed cell death (PCD) has recently been implicated in modulating the removal of neutrophils recruited in acute myocardial infarction...

    Yihao Zhu, Yuxi Chen, Yao Zu in Journal of Translational Medicine
    Article Open access 02 July 2024
  14. Prognosis-correlated Systems Involving Characteristic Diagnostic Gene Sets for Survival Analysis on Glioma

    As the most prevalent brain tumor, glioma is malignant with poor prognostic outcomes. As a result, it is of great importance to detect biomarkers for...

    Junwei Li, Tingting Zhou, ... Peng Zhou in Journal of Molecular Neuroscience
    Article 23 December 2022
  15. Gene editing technology to improve antitumor T-cell functions in adoptive immunotherapy

    Adoptive immunotherapy, in which tumor-reactive T cells are prepared in vitro for adoptive transfer to the patient, can induce an objective clinical...

    Yusuke Ito, Satoshi Inoue, Yuki Kagoya in Inflammation and Regeneration
    Article Open access 11 March 2024
  16. Proteomic analysis of cardiorespiratory fitness for prediction of mortality and multisystem disease risks

    Despite the wide effects of cardiorespiratory fitness (CRF) on metabolic, cardiovascular, pulmonary and neurological health, challenges in the...

    Andrew S. Perry, Eric Farber-Eger, ... Ravi V. Shah in Nature Medicine
    Article Open access 04 June 2024
  17. A multi-ancestry polygenic risk score improves risk prediction for coronary artery disease

    Identification of individuals at highest risk of coronary artery disease (CAD)—ideally before onset—remains an important public health need. Prior...

    Aniruddh P. Patel, Minxian Wang, ... Amit V. Khera in Nature Medicine
    Article Open access 06 July 2023
  18. Drug repurposing by in silico prediction of cyclizine derivatives as antihyperlipemic agents

    Cardiovascular diseases are the primary factor for increased mortality rates around the world. Atherosclerosis brought on by high serum cholesterol...

    M. S. Afanamol, A. Deepika Dinesh, ... Arun Rasheed in In Silico Pharmacology
    Article 25 October 2023
  19. High heritability of ascending aortic diameter and trans-ancestry prediction of thoracic aortic disease

    Enlargement of the aorta is an important risk factor for aortic aneurysm and dissection, a leading cause of morbidity in the developed world. Here we...

    Catherine Tcheandjieu, Ke **ao, ... James R. Priest in Nature Genetics
    Article 30 May 2022
  20. Integration of single-cell regulon atlas and multi-omics data for prognostic stratification and personalized treatment prediction in human lung adenocarcinoma

    Transcriptional programs are often dysregulated in cancers. A comprehensive investigation of potential regulons is critical to the understanding of...

    Yi **ong, Yihao Zhang, ... Xuejun Li in Journal of Translational Medicine
    Article Open access 25 July 2023
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