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  1. Article

    Open Access

    Annotations of four high-quality indigenous chicken genomes identify more than one thousand missing genes in subtelomeric regions and micro-chromosomes with high G/C contents

    Although multiple chicken genomes have been assembled and annotated, the numbers of protein-coding genes in chicken genomes and their variation among breeds are still uncertain due to the low quality of these ...

    Siwen Wu, Tengfei Dou, Sisi Yuan, Shixiong Yan, Zhiqiang Xu, Yong Liu in BMC Genomics (2024)

  2. Article

    Open Access

    Artificial selection footprints in indigenous and commercial chicken genomes

    Although many studies have been done to reveal artificial selection signatures in commercial and indigenous chickens, a limited number of genes have been linked to specific traits. To identify more trait-relat...

    Siwen Wu, Tengfei Dou, Kun Wang, Sisi Yuan, Shixiong Yan, Zhiqiang Xu in BMC Genomics (2024)

  3. Article

    Open Access

    Author Correction: High quality assemblies of four indigenous chicken genomes and related functional data resources

    Siwen Wu, Kun Wang, Tengfei Dou, Sisi Yuan, Shixiong Yan, Zhiqiang Xu in Scientific Data (2024)

  4. Article

    Open Access

    High quality assemblies of four indigenous chicken genomes and related functional data resources

    Many lines of evidence indicate that red jungle fowl (RJF) is the primary ancestor of domestic chickens. Although multiple versions of RJF (galgal2-galgal5 and GRCg6a) and commercial chickens (GRCg7b/w and Hux...

    Siwen Wu, Kun Wang, Tengfei Dou, Sisi Yuan, Shixiong Yan, Zhiqiang Xu in Scientific Data (2024)

  5. Article

    Open Access

    Integrative analysis of transcriptomics and metabolomics to reveal the melanogenesis pathway of muscle and related meat characters in Wuliangshan black-boned chickens

    Melanin is an important antioxidant in food and has been used in medicine and cosmetology. Chicken meat with high melanin content from black-boned chickens have been considered a high nutritious food with pote...

    Tengfei Dou, Shixiong Yan, Lixian Liu, Kun Wang, Zonghui Jian, Zhiqiang Xu in BMC Genomics (2022)