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  1. Article

    Open Access

    MNMST: topology of cell networks leverages identification of spatial domains from spatial transcriptomics data

    Advances in spatial transcriptomics provide an unprecedented opportunity to reveal the structure and function of biology systems. However, current algorithms fail to address the heterogeneity and interpretabil...

    Yu Wang, Zaiyi Liu, **aoke Ma in Genome Biology (2024)

  2. Article

    Open Access

    Development of a machine learning-based radiomics signature for estimating breast cancer TME phenotypes and predicting anti-PD-1/PD-L1 immunotherapy response

    Since breast cancer patients respond diversely to immunotherapy, there is an urgent need to explore novel biomarkers to precisely predict clinical responses and enhance therapeutic efficacy. The purpose of our...

    **aorui Han, Yuan Guo, Huifen Ye, Zhihong Chen, Qingru Hu in Breast Cancer Research (2024)

  3. No Access

    Chapter and Conference Paper

    CS-Net: A Stain Style Transfer Network for Histology Images with CS-Gate Attention

    Accurate segmentation of epithelium in Hematoxylin-Eosin (HE)-stained oropharyngeal cancer (OPC) pathological images is the premise for quantitative diagnosis. However, the pathological features of OPC are hig...

    Zhengze Gong, **peng Pan, Chu Han, Bingjiang Qiu in Artificial Intelligence and Robotics (2024)

  4. Article

    Open Access

    Large-scale pancreatic cancer detection via non-contrast CT and deep learning

    Pancreatic ductal adenocarcinoma (PDAC), the most deadly solid malignancy, is typically detected late and at an inoperable stage. Early or incidental detection is associated with prolonged survival, but screen...

    Kai Cao, Yingda **a, Jiawen Yao, Xu Han, Lukas Lambert, Tingting Zhang in Nature Medicine (2023)

  5. No Access

    Article

    CT morphological features for predicting the risk of lymph node metastasis in T1 colorectal cancer

    The aim of this study is to evaluate the feasibility of clinicopathological characteristics and computed tomography (CT) morphological features in predicting lymph node metastasis (LNM) for patients with T1 co...

    Suyun Li, Zhenhui Li, Li Wang, Mimi Wu, **aobo Chen, Chutong He in European Radiology (2023)

  6. No Access

    Article

    An MRI-based scoring system for pretreatment risk stratification in locally advanced rectal cancer

    Accurately assessing the risk of recurrence in patients with locally advanced rectal cancer (LARC) before treatment is important for the development of treatment strategies. The purpose of this study is to dev...

    Minning Zhao, Lili Feng, Ke Zhao, Yanfen Cui, Zhenhui Li in British Journal of Cancer (2023)

  7. Article

    Open Access

    An artificial intelligence-based ecological index for prognostic evaluation of colorectal cancer

    In the tumor microenvironment (TME), the dynamic interaction between tumor cells and immune cells plays a critical role in predicting the prognosis of colorectal cancer. This study introduces a novel approach ...

    Qicong Chen, Ming Cai, **njuan Fan, Wenbin Liu, Gang Fang, Su Yao, Yao Xu in BMC Cancer (2023)

  8. No Access

    Article

    Prediction of platinum resistance for advanced high-grade serous ovarian carcinoma using MRI-based radiomics nomogram

    This study aimed to explore the value of a radiomics nomogram to identify platinum resistance and predict the progression-free survival (PFS) of patients with advanced high-grade serous ovarian carcinoma (HGSOC).

    Haiming Li, Songqi Cai, Lin Deng, Zebin **ao, Qinhao Guo in European Radiology (2023)

  9. Article

    Open Access

    Sub-minute acquisition with deep learning-based image filter in the diagnosis of colorectal cancers using total-body 18F-FDG PET/CT

    This study aimed to retrospectively evaluate the feasibility of total-body 18F-FDG PET/CT ultrafast acquisition combined with a deep learning (DL) image filter in the diagnosis of colorectal cancers (CRCs).

    Entao Liu, Zejian Lyu, Yuelong Yang, Yang Lv, Yumo Zhao, **aochun Zhang in EJNMMI Research (2023)

  10. Article

    Author Correction: Chinese expert recommendation of scanning protocol and clinical application of magnetic resonance cholangiopancreatography

    Huadan Xue, Ming He, Zaiyi Liu, **nming Zhao in Chinese Journal of Academic Radiology (2023)

  11. Article

    Open Access

    Necrosis score as a prognostic factor in stage I–III colorectal cancer: a retrospective multicenter study

    Tumor necrosis results from failure to meet the requirement for rapid proliferation of tumor, related to unfavorable prognosis in colorectal cancer (CRC). However, previous studies used traditional microscopes...

    Huifen Ye, Yiting Wang, Su Yao, Zaiyi Liu, Changhong Liang, Yaxi Zhu in Discover Oncology (2023)

  12. No Access

    Article

    Chinese expert recommendation of scanning protocol and clinical application of magnetic resonance cholangiopancreatography

    Magnetic resonance cholangiopancreatography (MRCP) is an effective, safe, and non-invasive method for evaluation of pancreaticobiliary duct-related diseases. Optimizing the MRCP scanning process, standardizing...

    Huadan Xue, Ming He, Zaiyi Liu, **nming Zhao in Chinese Journal of Academic Radiology (2023)

  13. No Access

    Article

    Axillary ultrasound after neoadjuvant therapy reduces the false-negative rate of sentinel lymph node biopsy in patients with cytologically node-positive breast cancer

    This study aimed to determine whether post-neoadjuvant therapy (NAT) axillary ultrasound (AUS) could reduce the false-negative rate (FNR) of sentinel lymph node biopsy (SLNB). We also performed subgroup analys...

    Yu Liu, Ying Wang, Senwen Feng, Zeyan Xu in Breast Cancer Research and Treatment (2023)

  14. No Access

    Chapter and Conference Paper

    UOD: Universal One-Shot Detection of Anatomical Landmarks

    One-shot medical landmark detection gains much attention and achieves great success for its label-efficient training process. However, existing one-shot learning methods are highly specialized in a single doma...

    Heqin Zhu, Quan Quan, Qingsong Yao in Medical Image Computing and Computer Assis… (2023)

  15. No Access

    Chapter and Conference Paper

    Parse and Recall: Towards Accurate Lung Nodule Malignancy Prediction Like Radiologists

    Lung cancer is a leading cause of death worldwide and early screening is critical for improving survival outcomes. In clinical practice, the contextual structure of nodules and the accumulated experience of ra...

    Jianpeng Zhang, **anghua Ye, Jianfeng Zhang in Medical Image Computing and Computer Assis… (2023)

  16. No Access

    Chapter and Conference Paper

    Improved Prognostic Prediction of Pancreatic Cancer Using Multi-phase CT by Integrating Neural Distance and Texture-Aware Transformer

    Pancreatic ductal adenocarcinoma (PDAC) is a highly lethal cancer in which the tumor-vascular involvement greatly affects the resectability and, thus, overall survival of patients. However, current prognostic ...

    Hexin Dong, Jiawen Yao, Yuxing Tang in Medical Image Computing and Computer Assis… (2023)

  17. No Access

    Chapter and Conference Paper

    \(M^{2}\) Fusion: Bayesian-Based Multimodal Multi-level Fusion on Colorectal Cancer Microsatellite Instability Prediction

    Colorectal cancer (CRC) micro-satellite instability (MSI) prediction on histopathology images is a challenging weakly supervised learning task that involves multi-instance learning on gigapixel images. To date...

    Quan Liu, Jiawen Yao, Lisha Yao, **n Chen in Medical Image Computing and Computer Assis… (2023)

  18. No Access

    Chapter and Conference Paper

    Treatment Outcome Prediction for Intracerebral Hemorrhage via Generative Prognostic Model with Imaging and Tabular Data

    Intracerebral hemorrhage (ICH) is the second most common and deadliest form of stroke. Despite medical advances, predicting treatment outcomes for ICH remains a challenge. This paper proposes a novel prognosti...

    Wenao Ma, Cheng Chen, Jill Abrigo in Medical Image Computing and Computer Assis… (2023)

  19. No Access

    Chapter and Conference Paper

    DBL-MPE: Deep Broad Learning for Prediction of Response to Neo-adjuvant Chemotherapy Using MRI-Based Multi-angle Maximal Enhancement Projection in Breast Cancer

    Neo-adjuvant chemotherapy (NAC) is one of the main treatments in breast cancer, given before surgery to reduce the tumor's size and increase the surgical outcome's success rate. Predicting the response of brea...

    Zihan Cao, Zhenwei Shi, **aoMei Huang in Advanced Intelligent Computing Technology … (2023)

  20. No Access

    Chapter and Conference Paper

    Cluster-Induced Mask Transformers for Effective Opportunistic Gastric Cancer Screening on Non-contrast CT Scans

    Gastric cancer is the third leading cause of cancer-related mortality worldwide, but no guideline-recommended screening test exists. Existing methods can be invasive, expensive, and lack sensitivity to identif...

    Mingze Yuan, Yingda **a, **n Chen in Medical Image Computing and Computer Assis… (2023)

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