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  1. Article

    Open Access

    Dimeric transport mechanism of human vitamin C transporter SVCT1

    Vitamin C plays important roles as a cofactor in many enzymatic reactions and as an antioxidant against oxidative stress. As some mammals including humans cannot synthesize vitamin C de novo from glucose, its ...

    Takaaki A. Kobayashi, Hiroto Shimada, Fumiya K. Sano, Yuzuru Itoh in Nature Communications (2024)

  2. Article

    Open Access

    Structural basis for pegRNA-guided reverse transcription by a prime editor

    The prime editor system composed of Streptococcus pyogenes Cas9 nickase (nSpCas9) and engineered Moloney murine leukaemia virus reverse transcriptase (M-MLV RT) collaborates with a prime editing guide RNA (pegRNA...

    Yutaro Shuto, Ryoya Nakagawa, Shiyou Zhu, Mizuki Hoki, Satoshi N. Omura in Nature (2024)

  3. Article

    Open Access

    Mitoribosome structure with cofactors and modifications reveals mechanism of ligand binding and interactions with L1 stalk

    The mitoribosome translates mitochondrial mRNAs and regulates energy conversion that is a signature of aerobic life forms. We present a 2.2 Å resolution structure of human mitoribosome together with validated ...

    Vivek Singh, Yuzuru Itoh, Samuel Del’Olio, Asem Hassan in Nature Communications (2024)

  4. Article

    Open Access

    Mechanistic and evolutionary insights into a type V-M CRISPR–Cas effector enzyme

    RNA-guided type V CRISPR–Cas12 effectors provide adaptive immunity against mobile genetic elements (MGEs) in bacteria and archaea. Among diverse Cas12 enzymes, the recently identified Cas12m2 (CRISPR–Cas type ...

    Satoshi N. Omura, Ryoya Nakagawa in Nature Structural & Molecular Biology (2023)

  5. Article

    Open Access

    Cryo-EM structure of the transposon-associated TnpB enzyme

    The class 2 type V CRISPR effector Cas12 is thought to have evolved from the IS200/IS605 superfamily of transposon-associated TnpB proteins1. Recent studies have identified TnpB proteins as miniature RNA-guided D...

    Ryoya Nakagawa, Hisato Hirano, Satoshi N. Omura, Suchita Nety, Soumya Kannan in Nature (2023)

  6. Article

    Open Access

    Mechanism of mitoribosomal small subunit biogenesis and preinitiation

    Mitoribosomes are essential for the synthesis and maintenance of bioenergetic proteins. Here we use cryo-electron microscopy to determine a series of the small mitoribosomal subunit (SSU) intermediates in comp...

    Yuzuru Itoh, Anas Khawaja, Ivan Laptev, Miriam Cipullo, Ilian Atanassov in Nature (2022)

  7. Article

    Open Access

    Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi

    Mitoribosomes are specialized protein synthesis machineries in mitochondria. However, how mRNA binds to its dedicated channel, and tRNA moves as the mitoribosomal subunit rotate with respect to each other is n...

    Yuzuru Itoh, Andreas Naschberger, Narges Mortezaei in Nature Communications (2020)

  8. Article

    Open Access

    Distinct pre-initiation steps in human mitochondrial translation

    Translation initiation in human mitochondria relies upon specialized mitoribosomes and initiation factors, mtIF2 and mtIF3, which have diverged from their bacterial counterparts. Here we report two distinct mi...

    Anas Khawaja, Yuzuru Itoh, Cristina Remes, Henrik Spåhr in Nature Communications (2020)

  9. Article

    Open Access

    Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7

    Phagocytosis is a cellular process for internalization of micron-sized large particles including pathogens. The Bin-Amphiphysin-Rvs167 (BAR) domain proteins, including the FCH-BAR (F-BAR) domain proteins, impo...

    Kyoko Hanawa-Suetsugu, Yuzuru Itoh, Maisarah Ab Fatah in Nature Communications (2019)

  10. Article

    Open Access

    Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC

    The AAA+ GTPase McrB powers DNA cleavage by the endonuclease McrC. The GTPase itself is activated by McrC. The architecture of the GTPase and nuclease complex, and the mechanism of their activation remained un...

    Neha Nirwan, Yuzuru Itoh, Pratima Singh, Sutirtha Bandyopadhyay in Nature Communications (2019)

  11. No Access

    Article

    TRPV4 channel activity is modulated by direct interaction of the ankyrin domain to PI(4,5)P2

    Mutations in the ankyrin repeat domain (ARD) of TRPV4 are responsible for several channelopathies, including Charcot–Marie–Tooth disease type 2C and congenital distal and scapuloperoneal spinal muscular atroph...

    Nobuaki Takahashi, Sayaka Hamada-Nakahara, Yuzuru Itoh in Nature Communications (2014)

  12. No Access

    Article

    Phosphatidylcholine-specific phospholipase C, but not phospholipase D, is involved in pemphigus IgG-induced signal transduction

    M. Seishima, Yoshihiko Iwasaki-Bessho, Yuzuru Itoh in Archives of Dermatological Research (1999)