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  1. No Access

    Article

    A generalized integrated framework for urban public transport operations evaluation based on interval neutrosophic TODIM and EDAS technique

    With the acceleration of urbanization construction, the contradiction between supply and demand of urban public transportation resources is becoming increasingly prominent, resulting in increasingly serious pr...

    Yunpeng Cai in Soft Computing (2024)

  2. No Access

    Chapter and Conference Paper

    gaBERT: An Interpretable Pretrained Deep Learning Framework for Cancer Gene Marker Discovery

    Cancer classification based on gene expression profiles and the identification of significant oncogenes have become hot research topics in the field of bioinformatics. However, the complexity, high-dimensional...

    Jiale Hou, Zikai Wang, Haoran Lu, **nzhe Pang in Bioinformatics Research and Applications (2024)

  3. No Access

    Chapter and Conference Paper

    RFIR: A Lightweight Network for Retinal Fundus Image Restoration

    Retinal fundus images can be utilized for the diagnosis and screening of ocular or other diseases. However, not all devices and operators can directly obtain high-quality retinal images. Low resolution or poor...

    Limai Jiang, Yi Pan, Yunpeng Cai in Bioinformatics Research and Applications (2024)

  4. No Access

    Article

    Resonance analysis between deck and cables in cable-stayed bridges with coupling effect of adjacent cables considered

    The nonlinear dynamic model of a shallow arch with multiple cables is developed to model a long-span cable-stayed bridge. Based on the veering phenomenon of cable-stayed bridges, the in-plane modal internal re...

    Houjun Kang, Yunpeng Cai, Yunyue Cong, **aoyang Su, Guirong Yan in Nonlinear Dynamics (2023)

  5. No Access

    Chapter and Conference Paper

    Consistency Formation Maneuver Control Based on Nonlinear Dynamic Inverse

    In the process of formation control, the conventional consistent formation control methods often adjust the relative position of each aircraft relative to the formation virtual center node to achieve formation...

    Yunhui Wang, Yunpeng Cai, Yinghua Han in Advances in Guidance, Navigation and Contr… (2023)

  6. No Access

    Chapter and Conference Paper

    M-US-EMRs: A Multi-modal Data Fusion Method of Ultrasonic Images and Electronic Medical Records Used for Screening of Coronary Heart Disease

    Coronary heart disease (CHD) is the leading cause of death and disease burden in China and world-wide. The accurate screening for CHD can be of great value to guiding and facilitating the treatment. Traditiona...

    Bokai Yang, Yingnan Zuo, Shunxiang Yang in Bioinformatics Research and Applications (2022)

  7. No Access

    Chapter and Conference Paper

    Multi-BERT-wwm Model Based on Probabilistic Graph Strategy for Relation Extraction

    As the core work of information extraction, relation extraction aims to find medical entity pairs with relations from the medical records. The current methods of relation extraction either ignore the relevance...

    Yingxiang Zhang, **angyun Liao, Li Chen, Hongjun Kang in Health Information Science (2021)

  8. No Access

    Article

    A novel hybrid network of fusing rhythmic and morphological features for atrial fibrillation detection on mobile ECG signals

    Atrial fibrillation (AF) is one of the most common arrhythmia diseases, the incidence of which is ascendant with age increase. What’s more, AF is a high-risk factor for stroke, ischemia myocardial and other ma...

    **aomao Fan, Zhe**g Hu, Ruxin Wang, Liyan Yin, Ye Li in Neural Computing and Applications (2020)

  9. No Access

    Protocol

    Albumin-Binding Fatty Acid–Modified Gapmer Antisense Oligonucleotides for Modulation of Pharmacokinetics

    Prolonged circulation and modulation of the pharmacokinetic profile are important to improve the clinical potential of antisense oligonucleotides (ASOs). Gapmer ASOs demonstrate excellent nuclease stability an...

    Yunpeng Cai, Chenguang Lou, Jesper Wengel, Kenneth A. Howard in Gapmers (2020)

  10. Article

    Open Access

    A benchmark study of sequence alignment methods for protein clustering

    Protein sequence alignment analyses have become a crucial step for many bioinformatics studies during the past decades. Multiple sequence alignment (MSA) and pair-wise sequence alignment (PSA) are two major ap...

    Yingying Wang, Hongyan Wu, Yunpeng Cai in BMC Bioinformatics (2018)

  11. Article

    Open Access

    Author Correction: Multi-label Learning for Predicting the Activities of Antimicrobial Peptides

    A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has been fixed in the paper.

    Pu Wang, Ruiquan Ge, Liming Liu, Xuan **ao, Ye Li, Yunpeng Cai in Scientific Reports (2018)

  12. Article

    Open Access

    Mobile GPU-based implementation of automatic analysis method for long-term ECG

    Long-term electrocardiogram (ECG) is one of the important diagnostic assistant approaches in capturing intermittent cardiac arrhythmias. Combination of miniaturized wearable holters and healthcare platforms en...

    **aomao Fan, Qihang Yao, Ye Li, Runge Chen, Yunpeng Cai in BioMedical Engineering OnLine (2018)

  13. No Access

    Chapter and Conference Paper

    Automatic Text Classification for Label Imputation of Medical Diagnosis Notes Based on Random Forest

    Electronic medical records (EMRs) contain many information of patients, which are of great value for data mining for various clinical applications. However, information missing, including label missing, is per...

    Bokai Yang, Guangzhe Dai, Yujie Yang, Darong Tang, Qi Li in Health Information Science (2018)

  14. No Access

    Article

    Rectified-Linear-Unit-Based Deep Learning for Biomedical Multi-label Data

    Disease diagnosis is one of the major data mining questions by the clinicians. The current diagnosis models usually have a strong assumption that one patient has only one disease, i.e. a single-label data mining ...

    Pu Wang, Ruiquan Ge, Xuan **ao, Yunpeng Cai in Interdisciplinary Sciences: Computational … (2017)

  15. Article

    Open Access

    Multi-label Learning for Predicting the Activities of Antimicrobial Peptides

    Antimicrobial peptides (AMPs) are peptide antibiotics with a broad spectrum of antimicrobial activities. Activity prediction of AMPs from their amino acid sequences is of great therapeutic importance but impos...

    Pu Wang, Ruiquan Ge, Liming Liu, Xuan **ao, Ye Li, Yunpeng Cai in Scientific Reports (2017)

  16. No Access

    Book

  17. No Access

    Chapter and Conference Paper

    Analyses of the Dual Immune Roles Cytokines Play in Ischemic Stroke

    Stroke is one of the leading causes of morbidity and permanent disability worldwide. There is a need for an efficacious alternative therapy administered beyond the limitation of time window based on the biolog...

    Yingying Wang, Jianfeng Liu, Haibo Yu, Yunpeng Cai in Health Information Science (2017)

  18. No Access

    Chapter

    Metagenomics for Monitoring Environmental Biodiversity: Challenges, Progress, and Opportunities

    Metagenomics, as the genomic analysis of DNA materials from environmental samples containing multiple genomic components, is attracting more and more interests due to its wide applications on microbial, cancer...

    Raghu Chandramohan, Cheng Yang, Yunpeng Cai in Health Informatics Data Analysis (2017)

  19. Article

    Open Access

    CRISPRdigger: detecting CRISPRs with better direct repeat annotations

    Clustered regularly interspaced short palindromic repeats (CRISPRs) are important genetic elements in many bacterial and archaeal genomes, and play a key role in prokaryote immune systems’ fight against invasi...

    Ruiquan Ge, Guoqin Mai, Pu Wang, Manli Zhou, Youxi Luo, Yunpeng Cai in Scientific Reports (2016)

  20. Article

    Open Access

    Obtaining Human Ischemic Stroke Gene Expression Biomarkers from Animal Models: A Cross-species Validation Study

    Recent studies have revealed the systematic altering of gene expression in human peripheral blood during the early stages of ischemic stroke, which suggests a new potential approach for the rapid diagnosis or ...

    Yingying Wang, Yunpeng Cai in Scientific Reports (2016)

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