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  1. Article

    Open Access

    iJGVD: an integrative Japanese genome variation database based on whole-genome sequencing

    The integrative Japanese Genome Variation Database (iJGVD; http://ijgvd.megabank.tohoku.ac.jp/) provides genomic variation data detected by whole-genome sequ...

    Yumi Yamaguchi-Kabata, Naoki Nariai, Yosuke Kawai, Yukuto Sato in Human Genome Variation (2015)

  2. Article

    Open Access

    Integrated analysis of human genetic association study and mouse transcriptome suggests LBH and SHF genes as novel susceptible genes for amyloid-β accumulation in Alzheimer’s disease

    Alzheimer’s disease (AD) is a common neurological disease that causes dementia in humans. Although the reports of associated pathological genes have been increasing, the molecular mechanism leading to the accu...

    Yumi Yamaguchi-Kabata, Takashi Morihara, Tomoyuki Ohara in Human Genetics (2018)

  3. No Access

    Article

    Estimating carrier frequencies of newborn screening disorders using a whole-genome reference panel of 3552 Japanese individuals

    Incidence rates of Mendelian diseases vary among ethnic groups, and frequencies of variant types of causative genes also vary among human populations. In this study, we examined to what extent we can predict p...

    Yumi Yamaguchi-Kabata, Jun Yasuda, Akira Uruno, Kazuro Shimokawa in Human Genetics (2019)

  4. Article

    Open Access

    3.5KJPNv2: an allele frequency panel of 3552 Japanese individuals including the X chromosome

    The first step towards realizing personalized healthcare is to catalog the genetic variations in a population. Since the dissemination of individual-level genomic information is strictly controlled, it will be...

    Shu Tadaka, Fumiki Katsuoka, Masao Ueki, Kaname Kojima in Human Genome Variation (2019)

  5. Article

    Open Access

    Estimation of the carrier frequencies and proportions of potential patients by detecting causative gene variants associated with autosomal recessive bone dysplasia using a whole-genome reference panel of Japanese individuals

    Bone dysplasias are a group of rare hereditary diseases, with up to 436 disease types. Perinatal diagnosis is clinically important for adequate personalized management and counseling. There are no reports focu...

    Shinichi Nagaoka, Yumi Yamaguchi-Kabata, Naomi Shiga in Human Genome Variation (2021)

  6. Article

    Open Access

    Pathological variants in genes associated with disorders of sex development and central causes of hypogonadism in a whole-genome reference panel of 8380 Japanese individuals

    Disorders of sex development (DSD) comprises a congenital condition in which chromosomal, gonadal, or anatomical sex development is atypical. In this study, we screened for pathogenic variants in 32 genes asso...

    Naomi Shiga, Yumi Yamaguchi-Kabata, Saori Igeta, Jun Yasuda in Human Genome Variation (2022)