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  1. Article

    Open Access

    Local and global crosstalk among heterochromatin marks drives DNA methylome patterning in Arabidopsis

    Transposable elements (TEs) are robustly silenced by multiple epigenetic marks, but dynamics of crosstalk among these marks remains enigmatic. In Arabidopsis, TEs are silenced by cytosine methylation in both C...

    Taiko Kim To, Chikae Yamasaki, Shoko Oda, Sayaka Tominaga in Nature Communications (2022)

  2. Article

    Author Correction: RNA interference-independent reprogramming of DNA methylation in Arabidopsis

    A Correction to this paper has been published: https://doi.org/10.1038/s41477-020-00839-0.

    Taiko Kim To, Yuichiro Nishizawa, Soichi Inagaki, Yoshiaki Tarutani in Nature Plants (2021)

  3. No Access

    Article

    RNA interference-independent reprogramming of DNA methylation in Arabidopsis

    DNA methylation is important for silencing transposable elements (TEs) in diverse eukaryotes, including plants. In plant genomes, TEs are silenced by methylation of histone H3 lysine 9 (H3K9) and cytosines in ...

    Taiko Kim To, Yuichiro Nishizawa, Soichi Inagaki, Yoshiaki Tarutani in Nature Plants (2020)

  4. Article

    Open Access

    DNA methylation is reconfigured at the onset of reproduction in rice shoot apical meristem

    DNA methylation is an epigenetic modification that specifies the basic state of pluripotent stem cells and regulates the developmental transition from stem cells to various cell types. In flowering plants, the...

    Asuka Higo, Noriko Saihara, Fumihito Miura, Yoko Higashi in Nature Communications (2020)

  5. Article

    Open Access

    Evolution of sequence-specific anti-silencing systems in Arabidopsis

    The arms race between parasitic sequences and their hosts is a major driving force for evolution of gene control systems. Since transposable elements (TEs) are potentially deleterious, eukaryotes silence them ...

    Aoi Hosaka, Raku Saito, Kazuya Takashima, Taku Sasaki, Yu Fu in Nature Communications (2017)

  6. Article

    Open Access

    The histone H3 variant H3.3 regulates gene body DNA methylation in Arabidopsis thaliana

    Gene bodies of vertebrates and flowering plants are occupied by the histone variant H3.3 and DNA methylation. The origin and significance of these profiles remain largely unknown. DNA methylation and H3.3 enri...

    Heike Wollmann, Hume Stroud, Ramesh Yelagandula, Yoshiaki Tarutani in Genome Biology (2017)

  7. No Access

    Article

    A complex dominance hierarchy is controlled by polymorphism of small RNAs and their targets

    In diploid organisms, phenotypic traits are often biased by effects known as Mendelian dominant–recessive interactions between inherited alleles. Phenotypic expression of SP11 alleles, which encodes the male dete...

    Shinsuke Yasuda, Yuko Wada, Tomohiro Kakizaki, Yoshiaki Tarutani in Nature Plants (2016)

  8. No Access

    Article

    Trans-acting small RNA determines dominance relationships in Brassica self-incompatibility

    In diploid organisms, the expression levels of the two inherited alleles can be biased by dominant or recessive relationships, which determine the final phenotype. In Brassica, self-incompatibility in pollen is d...

    Yoshiaki Tarutani, Hiroshi Shiba, Megumi Iwano, Tomohiro Kakizaki, Go Suzuki in Nature (2010)

  9. No Access

    Article

    Dominance relationships between self-incompatibility alleles controlled by DNA methylation

    In crucifers, the pollen S-determinant gene, SP11, is sporophytically expressed in the anther tapetum, and the pollen self-incompatibility phenotype is determined by the dominance relationships between the two S-...

    Hiroshi Shiba, Tomohiro Kakizaki, Megumi Iwano, Yoshiaki Tarutani in Nature Genetics (2006)