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  1. No Access

    Article

    Unsupervised stain augmentation enhanced glomerular instance segmentation on pathology images

    In pathology images, different stains highlight different glomerular structures, so a supervised deep learning-based glomerular instance segmentation model trained on individual stains performs poorly on other...

    Fan Yang, Qiming He, Yanxia Wang, Siqi Zeng in International Journal of Computer Assisted… (2024)

  2. Article

    Open Access

    TEC-miTarget: enhancing microRNA target prediction based on deep learning of ribonucleic acid sequences

    MicroRNAs play a critical role in regulating gene expression by binding to specific target sites within gene transcripts, making the identification of microRNA targets a prominent focus of research. Convention...

    Tingpeng Yang, Yu Wang, Yonghong He in BMC Bioinformatics (2024)

  3. No Access

    Chapter and Conference Paper

    Classification of Myopic Maculopathy Images with Self-supervised Driven Multiple Instance Learning Network

    Myopia is a high-incidence disease that widely exists across various regions. If left unaddressed, it may escalate into high myopia. The leading cause of visual impairment is myopic maculopathy. Currently, cer...

    Jiawen Li, Jaehyeon Soon, Qilai Zhang, Qifan Zhang in Myopic Maculopathy Analysis (2024)

  4. No Access

    Chapter and Conference Paper

    ADEQ: Adaptive Diversity Enhancement for Zero-Shot Quantization

    Zero-shot quantization (ZSQ) is an effective way to compress neural networks, especially when real training sets are inaccessible because of privacy and security issues. Most existing synthetic-data-driven zer...

    **nrui Chen, Renao Yan, Junru Cheng, Yizhi Wang, Yuqiu Fu in Neural Information Processing (2024)

  5. No Access

    Article

    Unsupervised domain adaptive tumor region recognition for Ki67 automated assisted quantification

    Ki67 is a protein associated with tumor proliferation and metastasis in breast cancer and acts as an essential prognostic factor. Clinical work requires recognizing tumor regions on Ki67-stained whole-slide im...

    Qiming He, Yiqing Liu, Feiyang Pan in International Journal of Computer Assisted… (2023)

  6. Article

    Open Access

    Unique DUOX2+ACE2+ small cholangiocytes are pathogenic targets for primary biliary cholangitis

    Cholangiocytes play a crucial role in bile formation. Cholangiocyte injury causes cholestasis, including primary biliary cholangitis (PBC). However, the etiology of PBC remains unclear despite being characteri...

    ** Li, Yan Li, **tao **ao, Huiwen Wang, Yan Guo, **uru Mao in Nature Communications (2023)

  7. No Access

    Chapter and Conference Paper

    IIB-MIL: Integrated Instance-Level and Bag-Level Multiple Instances Learning with Label Disambiguation for Pathological Image Analysis

    Digital pathology plays a pivotal role in the diagnosis and interpretation of diseases and has drawn increasing attention in modern healthcare. Due to the huge gigapixel-level size and diverse nature of whole-...

    Qin Ren, Yu Zhao, Bing He, Bingzhe Wu in Medical Image Computing and Computer Assis… (2023)

  8. No Access

    Chapter and Conference Paper

    DEST: Deep Enhanced Swin Transformer Toward Better Scoring for NAFLD

    Nonalcoholic fatty liver disease (NAFLD) has become one of the most common liver diseases. Image analysis of liver biopsy is the gold standard for early diagnosis of NAFLD. Deep learning offers an effective to...

    Renao Yan, Qiming He, Yiqing Liu, Jizhou Gou in Pattern Recognition and Computer Vision (2022)

  9. No Access

    Chapter and Conference Paper

    The Generation of Virtual Immunohistochemical Staining Images Based on an Improved Cycle-GAN

    Pathological examination is the gold standard for the diagnosis of cancer. In general, common pathological examinations include hematoxylin-eosin (H&E) staining and immunohistochemistry. H&E staining examinati...

    Shuting Liu, ** Li, Ai** Zheng, Fan Yang in Machine Learning and Intelligent Communica… (2021)

  10. No Access

    Article

    Hydrogel-based microbeads for Raman-encoded suspension array using the reversed-phase suspension polymerization method and ultraviolet light curing

    A one-step synthesis using the reversed-phase suspension polymerization method and ultraviolet light curing is proposed for preparing the Raman-encoded suspension array (SA). The encoded microcarriers are prep...

    Xue**g Chen, Xuesi Zhou, Qinghua He, Yonghong He in Analytical and Bioanalytical Chemistry (2020)

  11. Article

    Open Access

    In situ map** of activity distribution and oxygen evolution reaction in vanadium flow batteries

    Understanding spatial distribution difference and reaction kinetics of the electrode is vital for enhancing the electrochemical reaction efficiency. Here, we report a total internal reflection imaging sensor w...

    Kaijie Ma, Yunong Zhang, Le Liu, **gyu **, ** Qiu, Tian Guan in Nature Communications (2019)

  12. No Access

    Article

    Gold-nanorod-enhanced Raman spectroscopy encoded micro-quartz pieces for the multiplex detection of biomolecules

    The rapid analysis and detection of biomolecules has become increasingly important in biological research. Hence, here we propose a novel suspension array method that is based on gold nanorod (AuNR)-enhanced R...

    Bei Wang, Tian Guan, **gying Jiang, Qinghua He in Analytical and Bioanalytical Chemistry (2019)

  13. Article

    Open Access

    Label-free and Non-destruction Determination of Single- and Double-Strand DNA based on Quantum Weak Measurement

    The process of unwinding and renaturation of DNA has been widely used in studies of nucleotide sequence organization. Compared with traditional methods for DNA unwinding and renaturation, the label-free and no...

    Tian Guan, Yuxuan Yang, Qianwen Zhang, Yonghong He, Naihan Xu in Scientific Reports (2019)

  14. No Access

    Article

    A Waveguide-Coupled Surface Plasmon Resonance Sensor Using an Au-MgF2-Au Structure

    We describe an Au-MgF2-Au trilayered waveguide-coupled surface plasmon resonance (WCSPR) sensor in this article. The characteristics of this sensing structure are compared with those of the conventional single-la...

    Pengfei Zhang, Le Liu, Yonghong He, **aoxia Chen, Kaijie Ma, Dong Wei in Plasmonics (2019)

  15. No Access

    Chapter and Conference Paper

    DPANet: A Novel Network Based on Dense Pyramid Feature Extractor and Dual Correlation Analysis Attention Modules for Colon Glands Segmentation

    Accurate segmentation of glands from histology images is a crucial step to obtain reliable morphological statistics for quantitative diagnosis. However, this task is formidable because of the enormous variabi...

    Shuting Liu, Baochang Zhang, ** Li in Uncertainty for Safe Utilization of Machin… (2019)

  16. No Access

    Article

    Digital triplex DNA assay based on plasmonic nanocrystals

    A new analytical method has been developed to detect three kinds of DNA simultaneously based on magnetic beads and color-encoded plasmonic nanocrystals. Magnetic beads modified with capture DNA are employed to...

    Guohua Li, Liang Zhu, Yonghong He, Hui Tan in Analytical and Bioanalytical Chemistry (2017)

  17. Article

    Open Access

    Digital barcodes of suspension array using laser induced breakdown spectroscopy

    We show a coding method of suspension array based on the laser induced breakdown spectroscopy (LIBS), which promotes the barcodes from analog to digital. As the foundation of digital optical barcodes, nanocrys...

    Qinghua He, Yixi Liu, Yonghong He, Liang Zhu, Yilong Zhang in Scientific Reports (2016)

  18. No Access

    Article

    The detection method for small molecules coupled with a molecularly imprinted polymer/quantum dot chip using a home-built optical system

    A method to detect small molecules with a molecularly imprinted polymer/quantum dot (MIP-QD) chip using a home-built optical fluidic system was first proposed in this study. Ractopamine (RAC) was used as the m...

    Yixi Liu, Yong Wang, Le Liu, Yonghong He in Analytical and Bioanalytical Chemistry (2016)

  19. No Access

    Article

    Temperature-Regulated Surface Plasmon Resonance Imaging System for Bioaffinity Sensing

    We describe a temperature-regulated surface plasmon resonance (SPR) imaging biosensor in this article. The sample temperature can be regulated for specific requirements of the bioaffinity sensing, and stabiliz...

    Pengfei Zhang, Le Liu, Yonghong He, Yanhong Ji, Jun Guo, Hui Ma in Plasmonics (2016)

  20. No Access

    Article

    Core 2 Mucin-Type O-Glycan Is Related to EPEC and EHEC O157:H7 Adherence to Human Colon Carcinoma HT-29 Epithelial Cells

    The roles of host glycosylation in interactions with EPEC and EHEC O157:H7 are largely unclear; this study examined whether O-glycans are involved in EPEC and EHEC O157:H7 adherence to HT-29 cells.

    Jun Ye, Lili Song, Yun Liu, Qiong Pan, **aoli Zhong in Digestive Diseases and Sciences (2015)

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