188 Result(s)

Article

Correction: Implications of accounting for marker-based population structure in the quantitative genetic evaluation of genetic parameters related to growth and wood properties in Norway spruce

Haleh Hayatgheibi, Henrik R. Hallingbäck, Sven-Olof Lundqvist… in BMC Genomic Data (2024)

Article

Metabolomic and transcriptomic analyses of peach leaves and fruits in response to pruning

Pruning is an important cultivation management option that has important effects on peach yield and quality. However, the effects of pruning on the overall genetic and metabolic changes in peach leaves and fru...

**ao-Fei Liu, **u-Hong An, **n-Miao Li, He Zhang, Hong-Bo Cao… in BMC Genomics (2024)

Article

Population genetic admixture and evolutionary history in the Shandong Peninsula inferred from integrative modern and ancient genomic resources

Ancient northern East Asians (ANEA) from the Yellow River region, who pioneered millet cultivation, play a crucial role in understanding the origins of ethnolinguistically diverse populations in modern China a...

Haoran Su, Mengge Wang, ** Li, Shuhan Duan, Qiuxia Sun, Yuntao Sun… in BMC Genomics (2024)

Article

Genomic investigation of Salmonella enterica Serovar Welikade from a pediatric diarrhea case first time in Shanghai, China

Salmonella, an important foodborne pathogen, was estimated to be responsible for 95.1 million cases and 50,771 deaths worldwide. Sixteen serovars were responsible for approximately 80% of Salmonella infections in...

Yinfang Shen, Yibin Zhou, **gyu Gong, Gang Li, Yue Liu, Xuebin Xu… in BMC Genomics (2024)

Article

Implications of accounting for marker-based population structure in the quantitative genetic evaluation of genetic parameters related to growth and wood properties in Norway spruce

Forest geneticists typically use provenances to account for population differences in their improvement schemes; however, the historical records of the imported materials might not be very precise or well-alig...

Haleh Hayatgheibi, Henrik R. Hallingbäck, Sven-Olof Lundqvist… in BMC Genomic Data (2024)

Article

Preliminary studies on the molecular mechanism of intramuscular fat deposition in the longest dorsal muscle of sheep

Intramuscular fat content is an important index reflecting the quality of mutton, which directly affects the flavor and tenderness of mutton. Livestock and poultry intramuscular fat content is influenced by ge...

Xuwen Shao, **ntan Lu, **nming Sun, Huaizhi Jiang, Yang Chen in BMC Genomics (2024)

Article

Genome-wide identification of quantitative trait loci and candidate genes for seven carcass traits in a four-way intercross porcine population

Carcass traits are essential economic traits in the commercial pig industry. However, the genetic mechanism of carcass traits is still unclear. In this study, we performed a genome-wide association study (GWAS...

Huiyu Wang, **aoyi Wang, Yongli Yang, Yixuan Zhu, Shuyan Wang, Qiang Chen… in BMC Genomics (2024)

Article

Protein expression patterns and metal metabolites in a protogynous hermaphrodite fish, the ricefield eel (Monopterus albus)

The ricefield eel Monopterus albus undergoes a natural sex change from female to male during its life cycle, and previous studies have shown the potential mechanisms of this transition at the transcriptional and ...

Zhi He, Feng **ao, Deying Yang, Faqiang Deng, Wenxiang Ding, Zhide He… in BMC Genomics (2024)

Article

Single nucleotide polymorphisms in the KRT82 promoter region modulate irregular thickening and patchiness in the dorsal skin of New Zealand rabbits

While rabbits are used as models in skin irritation tests, the presence of irregular patches and thickening on the dorsal skin can affect precise evaluation. In this study, genes associated with patchiness or ...

Bohao Zhao, Jiawei Cai, **yu Zhang, Jiali Li, Zhiyuan Bao, Yang Chen… in BMC Genomics (2024)

Article

Effects of hibernation on two important contractile tissues in tibetan frogs, Nanorana parkeri: a perspective from transcriptomics and metabolomics approaches

In response to seasonal cold and food shortage, the **zang plateau frogs, Nanorana parkeri (Anura: Dicroglossidae), enter a reversible hypometabolic state where heart rate and oxygen consumption in skeletal muscl...

Yonggang Niu, Xue**g Zhang, Shengkang Men, Tisen Xu, Haiying Zhang… in BMC Genomics (2024)

Article

Comparative transcriptomic analysis delineates adaptation strategies of Rana kukunoris toward cold stress on the Qinghai-Tibet Plateau

Cold hardiness is fundamental for amphibians to survive during the extremely cold winter on the Qinghai-Tibet plateau. Exploring the gene regulation mechanism of freezing-tolerant Rana kukunoris could help us to ...

Tao Zhang, Lun Jia, Zhiyi Niu, **nying Li, Shengkang Men, Lu Jiang… in BMC Genomics (2024)

Article

Response to: “Merit of integrating in situ transcriptomics and anatomical information for cell annotation and lineage construction in single-cell analyses of Populus”

Shaoming Liang, Yiling Li, Yang Chen, Heng Huang, Sijia Li… in Genome Biology (2024)

Article

Bioinformatics analysis identifies a key gene HLA_DPA1 in severe influenza-associated immune infiltration

Severe influenza is a serious global health issue that leads to prolonged hospitalization and mortality on a significant scale. The pathogenesis of this infectious disease is poorly understood. Therefore, this...

Liang Chen, Jie Hua, **aopu He in BMC Genomics (2024)

Article

Integrated analysis reveals FLI1 regulates the tumor immune microenvironment via its cell-type-specific expression and transcriptional regulation of distinct target genes of immune cells in breast cancer

Immunotherapy is a practical therapeutic approach in breast cancer (BRCA), and the role of FLI1 in immune regulation has gradually been unveiled. However, the specific role of FLI1 in BRCA was conflicted; thus...

Jianying Pei, Ying Peng, Kexin Ma, Chunyan Lan, Tingting Zhang, Yan Li… in BMC Genomics (2024)

Article

Population structure and adaptability analysis of Schizothorax o’connori based on whole-genome resequencing

Schizothorax o’connori is an endemic fish distributed in the upper and lower reaches of the Yarlung Zangbo River in China. It has experienced a fourth round of whole gene replication events and is a good model fo...

Kuo Gao, Zhi He, **xin **ong, Qiqi Chen, Bolin Lai, Fei Liu, ** Chen… in BMC Genomics (2024)

Article

Integration analysis of ATAC-seq and RNA-seq provides insight into fatty acid biosynthesis in Schizochytrium limacinum under nitrogen limitation stress

Schizochytrium limacinum holds significant value utilized in the industrial-scale synthesis of natural DHA. Nitrogen-limited treatment can effectively increase the content of fatty acids and DHA, but there is cur...

Duo Chen, **g Chen, Rongchun Dai, Xuehai Zheng, Yuying Han, Youqiang Chen… in BMC Genomics (2024)

Article

Genome-wide identification and expression analysis of the ADH gene family under diverse stresses in tobacco (Nicotiana tabacum L.)

Alcohol dehydrogenases (ADHs) are the crucial enzymes that can convert ethanol into acetaldehyde. In tobacco, members of ADH gene family are involved in various stresses tolerance reactions, lipid metabolism a...

Ruiqi Wang, Chaofan Du, Gang Gu, Binghui Zhang, **aolu Lin, Chengliang Chen… in BMC Genomics (2024)

Article

Comparative genomics analysis of Streptococcus iniae isolated from Trachinotus ovatus: novel insight into antimicrobial resistance and virulence differentiation

Streptococcus iniae is an important fish pathogen that cause significant economic losses to the global aquaculture industry every year. Although there have some reports on the genotype of S.iniae and its relation...

**angying **ong, Ruifang Chen, Junxiang Lai in BMC Genomics (2023)

Article

Transcriptome analysis of the Bactrian camel (Camelus bactrianus) reveals candidate genes affecting milk production traits

Milk production traits are complex traits with vital economic importance in the camel industry. However, the genetic mechanisms regulating milk production traits in camels remain poorly understood. Therefore, ...

Huaibing Yao, Zhihua Dou, Zhongkai Zhao, **aorui Liang, Haitao Yue… in BMC Genomics (2023)

Article

The Quartet Data Portal: integration of community-wide resources for multiomics quality control

The Quartet Data Portal facilitates community access to well-characterized reference materials, reference datasets, and related resources established based on a family of four individuals with identical twins ...

**gcheng Yang, Yaqing Liu, Jun Shang, Qiaochu Chen, Qingwang Chen… in Genome Biology (2023)