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  1. Article

    Open Access

    Prediction of linear B-cell epitopes of hepatitis C virus for vaccine development

    High genetic heterogeneity in the hepatitis C virus (HCV) is the major challenge of the development of an effective vaccine. Existing studies for develo** HCV vaccines have mainly focused on T-cell immune re...

    Wen-Lin Huang, Ming-Ju Tsai, Kai-Ti Hsu, Jyun-Rong Wang in BMC Medical Genomics (2015)

  2. Article

    Open Access

    Characterizing informative sequence descriptors and predicting binding affinities of heterodimeric protein complexes

    Protein-protein interactions (PPIs) are involved in various biological processes, and underlying mechanism of the interactions plays a crucial role in therapeutics and protein engineering. Most machine learnin...

    Yerukala Sathipati Srinivasulu, Jyun-Rong Wang, Kai-Ti Hsu in BMC Bioinformatics (2015)

  3. Article

    Open Access

    Prediction and analysis of protein solubility using a novel scoring card method with dipeptide composition

    Existing methods for predicting protein solubility on overexpression in Escherichia coli advance performance by using ensemble classifiers such as two-stage support vector machine (SVM) based classifiers and a nu...

    Hui-Ling Huang, Phasit Charoenkwan, Te-Fen Kao, Hua-Chin Lee in BMC Bioinformatics (2012)

  4. Article

    Open Access

    Predicting and analyzing DNA-binding domains using a systematic approach to identifying a set of informative physicochemical and biochemical properties

    Existing methods of predicting DNA-binding proteins used valuable features of physicochemical properties to design support vector machine (SVM) based classifiers. Generally, selection of physicochemical proper...

    Hui-Lin Huang, I-Che Lin, Yi-Fan Liou, Chia-Ta Tsai, Kai-Ti Hsu in BMC Bioinformatics (2011)

  5. Article

    Open Access

    ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization

    Gene Ontology (GO) annotation, which describes the function of genes and gene products across species, has recently been used to predict protein subcellular and subnuclear localization. Existing GO-based predi...

    Wen-Lin Huang, Chun-Wei Tung, Shih-Wen Ho, Shiow-Fen Hwang in BMC Bioinformatics (2008)