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  1. Article

    Open Access

    A feedback loop driven by H3K9 lactylation and HDAC2 in endothelial cells regulates VEGF-induced angiogenesis

    Vascular endothelial growth factor (VEGF) is one of the most powerful proangiogenic factors and plays an important role in multiple diseases. Increased glycolytic rates and lactate accumulation are associated ...

    Wei Fan, Shuhao Zeng, **aotang Wang, Guoqing Wang, Dan Liao, Ruonan Li in Genome Biology (2024)

  2. No Access

    Article

    Mechanisms of Triton X-100 reducing the Ag+-resistance of Enterococcus faecalis

    To investigate the mechanism of Triton X-100 (TX-100) reducing the Ag+-resistance of Enterococcus faecalis (E. faecalis), and evaluate the antibacterial effect of TX-100 + Ag+ against the induced Ag+-resistant E....

    Silei Lv, Mengting Duan, Bing Fan, Wei Fan in World Journal of Microbiology and Biotechn… (2024)

  3. Article

    Open Access

    RNA-Mediated Regulation of Glycolysis in Embryonic Stem Cell Pluripotency and Differentiation

    The maintenance and differentiation of embryonic stem cells are strictly coordinated with their metabolic status. As a core part of cellular metabolism, glycolysis provides energy and biomolecules important fo...

    Wei Fan, **aoling Li in Current Stem Cell Reports (2024)

  4. Article

    Open Access

    Integrated metabolome and transcriptome analyses reveal the molecular mechanism underlying dynamic metabolic processes during taproot development of Panax notoginseng

    Panax notoginseng (Burk) F. H. Chen is one of the most famous Chinese traditional medicinal plants. The taproot is the main organ producing triterpenoid saponins, and its development is directly linked to the qua...

    Xuejiao Li, Yan Zhao, Shuilian He, **g Meng, Yingchun Lu, Huineng Shi in BMC Plant Biology (2024)

  5. Article

    Open Access

    Author Correction: The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence

    **ong Huang, Wenling Wang, Ting Gong, David Wickell, Li-Yaung Kuo in Nature Plants (2024)

  6. Article

    Open Access

    Soil bacterial and fungal communities resilience to long-term nitrogen addition in subtropical forests in China

    Atmospheric nitrogen (N) deposition is predicted to increase, especially in the subtropics. However, the responses of soil microorganisms to long-term N addition at the molecular level in N-rich subtropical fo...

    **nlei Fu, Yunze Dai, Jun Cui, Pengfei Deng, Wei Fan in Journal of Forestry Research (2023)

  7. No Access

    Article

    Bidirectional two-sample mendelian randomization analysis identifies causal associations between age at menarche and sarcopenia-related traits

    Observational studies have shown that the age of menarche is associated with sarcopenia, but confounding factors make the causal relationship difficult to infer.

    Wei Fan, Peng Gu, Bin Pu, Dan Yue, Qiao **n, **aoHui Zheng in Genes & Genomics (2023)

  8. Article

    Open Access

    Inhibition of extranodal NK/T-cell lymphoma by Chiauranib through an AIF-dependent pathway and its synergy with L-asparaginase

    Extranodal NK/T-cell lymphoma (NKTL) is a rare and aggressive form of extranodal lymphoma with a poor prognosis. Currently, there are very limited treatment options for patients with advanced-stage disease or ...

    Tianxiao Gao, Jieye Huang, Haofan Yin, Jiajia Huang, **ye **e in Cell Death & Disease (2023)

  9. Article

    Open Access

    YY1 lactylation in microglia promotes angiogenesis through transcription activation-mediated upregulation of FGF2

    Ocular neovascularization is a leading cause of blindness. Retinal microglia have been implicated in hypoxia-induced angiogenesis and vasculopathy, but the underlying mechanisms are not entirely clear. Lactyla...

    **aotang Wang, Wei Fan, Na Li, Yan Ma, Mudi Yao, Guoqing Wang, Siyuan He in Genome Biology (2023)

  10. No Access

    Article

    Effects of intercrop** systems of Phyllostachys edulis and Bletilla striata on soil bacterial community composition and function

    Intercrop** can result in changes in vegetation and soil properties, which could affect soil bacterial communities and functions that play critically important roles in the biogeochemical cycles in terrestri...

    Huiling Wang, **aoqing Cao, Wei Fan, Pengfei Deng, **aoniu Xu in Agroforestry Systems (2023)

  11. Article

    Open Access

    Chromosome-level genome of black cutworm provides novel insights into polyphagy and seasonal migration in insects

    The black cutworm, Agrotis ipsilon, is a serious global underground pest. Its distinct phenotypic traits, especially its polyphagy and ability to migrate long distances, contribute to its widening distribution an...

    Minghui **, Bo Liu, Weigang Zheng, Conghui Liu, Zhenxing Liu, Yuan He in BMC Biology (2023)

  12. Article

    Open Access

    Fusobacterium nucleatum triggers proinflammatory cell death via Z-DNA binding protein 1 in apical periodontitis

    Z-DNA binding protein 1 (ZBP1) is a vital innate immune sensor that regulates inflammation during pathogen invasion. ZBP1 may contribute to pyroptosis, apoptosis and necroptosis in infectious diseases. In this...

    Hui Liu, Yuxuan Liu, Wei Fan, Bing Fan in Cell Communication and Signaling (2022)

  13. Article

    Open Access

    EndHiC: assemble large contigs into chromosome-level scaffolds using the Hi-C links from contig ends

    The application of PacBio HiFi and ultra-long ONT reads have enabled huge progress in the contig-level assembly, but it is still challenging to assemble large contigs into chromosomes with available Hi-C scaff...

    Sen Wang, Hengchao Wang, Fan Jiang, Anqi Wang, Hangwei Liu in BMC Bioinformatics (2022)

  14. No Access

    Article

    Ectopic Expression of Erigeron breviscapus JAZ1 Affects JA-Induced Development Processes in Transgenic Arabidopsis

    The jasmonate ZIM-domain (JAZ) proteins are repressors that function in the regulation of plant growth, development, and response to stimulation of different signals in the JA signaling pathway. Erigeron brevisca...

    Mo Chen, Wei Zhang, Mi Yan, Simei He, Yingchun Lu in Plant Molecular Biology Reporter (2022)

  15. Article

    Open Access

    Gene fusion as an important mechanism to generate new genes in the genus Oryza

    Events of gene fusion have been reported in several organisms. However, the general role of gene fusion as part of new gene origination remains unknown.

    Yanli Zhou, Chengjun Zhang, Li Zhang, Qiannan Ye, Ningyawen Liu in Genome Biology (2022)

  16. No Access

    Article

    AgRP neurons control feeding behaviour at cortical synapses via peripherally derived lysophospholipids

    Phospholipid levels are influenced by peripheral metabolism. Within the central nervous system, synaptic phospholipids regulate glutamatergic transmission and cortical excitability. Whether changes in peripher...

    Heiko Endle, Guilherme Horta, Bernardo Stutz, Muthuraman Muthuraman in Nature Metabolism (2022)

  17. Article

    Open Access

    The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence

    To date, little is known about the evolution of fern genomes, with only two small genomes published from the heterosporous Salviniales. Here we assembled the genome of Alsophila spinulosa, known as the flying spi...

    **ong Huang, Wenling Wang, Ting Gong, David Wickell, Li-Yaung Kuo in Nature Plants (2022)

  18. Article

    Open Access

    Chemically defined and small molecules-based generation of sinoatrial node-like cells

    Existing methods for in vitro differentiation of human pluripotent stem cells (hPSCs) into sinoatrial node-like cells (SANLCs) require complex and undefined medium constituents. This might hinder the elucidati...

    **aojie Hou, Shuhong Ma, Wei Fan, Fang Li, Miaomiao Xu in Stem Cell Research & Therapy (2022)

  19. No Access

    Article

    Enhanced antibacterial effect against Enterococcus faecalis by silver ions plus Triton X-100 with low concentrations and cytotoxicity

    Enterococcus faecalis (E. faecalis) is commonly considered to be one of chief culprits of secondary and persistent root canal infections. As antibiotic resistance has become a global issue, in order to reduce the...

    Mengting Duan, Qing Sun, Wei Fan, Bing Fan in Brazilian Journal of Microbiology (2022)

  20. No Access

    Article

    Transcriptome Analysis Reveals Molecular Mechanisms Underlying Methyl Jasmonate-mediated Biosynthesis of Protopanaxadiol-type Saponins in Panax notoginseng Leaves

    Methyl jasmonate (MeJA) has been widely used to improve the biosynthesis of secondary metabolites such as triterpenoid saponins in medicinal plants. However, the underlying molecular mechanisms remain poorly u...

    Ying Li, Yuan Lin, Bing Jia, Geng Chen, Huineng Shi, Rui Xu in Journal of Plant Biology (2022)

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