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  1. Article

    Open Access

    The Pseudomonas aeruginosa accessory genome elements influence virulence towards Caenorhabditis elegans

    Multicellular animals and bacteria frequently engage in predator-prey and host-pathogen interactions, such as the well-studied relationship between Pseudomonas aeruginosa and the nematode Caenorhabditis elegans. ...

    Alejandro Vasquez-Rifo, Isana Veksler-Lublinsky, Zhenyu Cheng in Genome Biology (2019)

  2. No Access

    Article

    mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein–enriched transcripts

    A new prediction algorithm for microRNA targets, mirWIP, is presented. The algorithm weights target site features based on their enrichment in an experimentally defined immunoprecipitation dataset and identifi...

    Molly Hammell, Dang Long, Liang Zhang, Andrew Lee, C Steven Carmack in Nature Methods (2008)

  3. No Access

    Article

    Potent effect of target structure on microRNA function

    MicroRNAs (miRNAs) are small noncoding RNAs that repress protein synthesis by binding to target messenger RNAs. We investigated the effect of target secondary structure on the efficacy of repression by miRNAs....

    Dang Long, Rosalind Lee, Peter Williams in Nature Structural & Molecular Biology (2007)

  4. Article

    Expression profiling of mammalian microRNAs uncovers a subset of brain-expressed microRNAs with possible roles in murine and human neuronal differentiation

    The microRNAs (miRNAs) are an extensive class of small noncoding RNAs (18 to 25 nucleotides) with probable roles in the regulation of gene expression. In Caenorhabditis elegans, lin-4 and let-7 miRNAs control the...

    Lorenzo F Sempere, Sarah Freemantle, Ian Pitha-Rowe, Eric Moss in Genome Biology (2004)

  5. No Access

    Protocol

    Identification of microRNAs and Other Tiny Noncoding RNAs by cDNA Cloning

    MicroRNAs (miRNAs) and other small RNAs can be identified by cloning and sequencing cDNAs prepared from the ∼22-nt fraction of total RNA. Methods are described for the construction of cDNA libraries from small...

    Victor Ambros, Rosalind C. Lee in RNA Interference, Editing, and Modification (2004)

  6. No Access

    Chapter

    Genetic Basis for Heterochronic Variation

    Genes encode the functional and structural components of cells and hence directly or indirectly define the behavior of individual cells and groups of cells in a develo** system. In this sense the genome of a...

    Victor Ambros in Heterochrony in Evolution (1988)