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  1. Article

    Open Access

    methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data

    Numerous methods are available to profile several epigenetic marks, providing data with different genome coverage and resolution. Large epigenomic datasets are then generated, and often combined with other hig...

    Kamal Kishore, Stefano de Pretis, Ryan Lister, Marco J. Morelli… in BMC Bioinformatics (2015)

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  2. Article

    Open Access

    Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities

    The identification of ligand binding sites is a key task in the annotation of proteins with known structure but uncharacterized function. Here we describe a knowledge-based method exploiting the observation th...

    Valerio Bianchi, Pier Federico Gherardini, Manuela Helmer-Citterich… in BMC Bioinformatics (2012)

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